Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
55.1_202017-07-20] 587 sequences; 18,505,623 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq449 188 2e-42
seq90 138 3e-27
>seq449
Length=79778
Score = 188 bits (208), Expect = 2e-42
Identities = 173/219 (79%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| ||||| ||||| || ||||| || ||||| || || |||||||| ||
Sbjct 77770 CAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCTGAT 77829
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| || ||||| || || ||||| || || ||||||
Sbjct 77830 ACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAA 77889
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||||||||||||||| || |||||||| | |||||| ||||||| || ||
Sbjct 77890 CGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATC 77949
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||| || || || || ||||| || ||| | ||| ||
Sbjct 77950 CAAAAGGAGTCTACCCTCCATCTCGTCTTGCGTCTCCGA 77988
Score = 145 bits (160), Expect = 2e-29
Identities = 136/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || |||||||| || || || ||||| || || ||||| || |||
Sbjct 77491 CAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCCGAC 77550
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| || ||||| || || |||||||| |||||||||
Sbjct 77551 ACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAGCAA 77610
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | ||||| || || || ||||| |||||||| |||||||| |||| ||
Sbjct 77611 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTA 77663
Score = 145 bits (160), Expect = 2e-29
Identities = 136/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||| || ||||| || ||||| || ||||| ||| ||| |||
Sbjct 77998 CAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCTGAC 78057
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || || |||||||| ||||| |||
Sbjct 78058 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAACAA 78117
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | |||||||||||||| || || |||||||| | ||| | | |||||
Sbjct 78118 CGATTGATCTTCGCCGGAAAGCAACTGGAAGATGGTCGAACTTTGTCTGATTA 78170
Score = 145 bits (160), Expect = 2e-29
Identities = 156/205 (76%), Gaps = 6/205 (3%)
Strand=Plus/Plus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGT 177997
||| || || || || ||||| || || || ||| ||| || |||||||| |||||
Sbjct 78575 TCTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGC---GATACCATCGACAACGT 78631
Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057
||| ||||| || ||||| || || ||||| || || ||||||||||| ||||||||
Sbjct 78632 CAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGC 78691
Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117
||||||||| || |||||||| | |||||| ||||||| || ||||||| || || ||
Sbjct 78692 CGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTAC 78751
Query 178118 ACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||||| || ||| | ||| ||
Sbjct 78752 CCTCCATCTCGTCTTGCGTCTCCGA 78776
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||| | || ||||| || ||||| || || || || || |||
Sbjct 78277 CAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCTGAC 78336
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| ||||| || ||||| || ||||||
Sbjct 78337 ACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 78396
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || || || || ||||| || || ||||| | |||||| |||| || ||| ||
Sbjct 78397 CGATTGATTTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGACTACAACATC 78456
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || || ||||||
Sbjct 78457 CAAAAGGAGTCTACCCTTCACCTTGTT 78483
>seq90
Length=80925
Score = 138 bits (152), Expect = 3e-27
Identities = 124/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000
||| || ||||| || |||||||||||||| || ||| ||||||||||| || |||||
Sbjct 51624 TCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAA 51565
Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060
||||| |||||||| || || ||||| || |||||||| ||| | |||||||||||
Sbjct 51564 GTCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGG 51505
Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| |||||||| || || ||||| ||| | || ||
Sbjct 51504 AAAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 51469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203722146812878
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |