Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 65.1_202017-07-20] 497 sequences; 18,521,151 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq317 140 3e-28 >seq317 Length=80037 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || | ||||| ||||||| ||||||||| Sbjct 78547 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 78606 Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | | | || || | ||| ||||| ||||| ||||| ||||| || Sbjct 78607 GACACTATCGACAACGTTAAGGCGAAGATTCA-GGACAAGGAAGGTATTCCTCCTGATCA 78665 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| || |||||| | || |||| ||| ||| | ||| ||||| Sbjct 78666 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 78725 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || ||||| ||||| || || || Sbjct 78726 CATCCAAAAGGAATCTACCCTTCA 78749 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| ||| |||| || | ||||| || ||| Sbjct 78040 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 78099 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| || || ||| || ||| ||||| || || || || ||||||| Sbjct 78100 GATACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACC 78157 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | ||||| ||||| || ||| | ||||| | || ||| | |||||||| Sbjct 78158 AGCAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACA 78217 Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202 |||| ||||| || ||||| || ||| Sbjct 78218 ATATCCAAAAGGAGTCCACTCTCCAT 78243 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || |||||| | |||||||| | ||||| | ||||||||||| Sbjct 77758 ACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 77817 Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| ||||| || || ||| || ||| ||||| || || || || |||| Sbjct 77818 TCCGACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTG 77875 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 |||| || || | || ||||| || || || | ||||||| Sbjct 77876 ACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 77917 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGC 25080 || ||||| | ||||| | ||||| || ||| || || ||||| || || ||| Sbjct 78852 ACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGA--CAATGTCAAGG 78909 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 || ||| ||||| || || || || ||||| || || || | || || ||||| | Sbjct 78910 CCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGAA 78969 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 ||||| | ||||||| || ||| | |||||||||||||||||| || ||||| || | Sbjct 78970 AACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTCC 79029 Query 25201 AT 25202 || Sbjct 79030 AT 79031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325375251055