Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 65.1_202017-07-20] 497 sequences; 18,521,151 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq317 113 5e-20 >seq317 Length=80037 Score = 113 bits (124), Expect = 5e-20 Identities = 222/324 (69%), Gaps = 12/324 (4%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||||| || | ||| |||||||| || || | ||| || ||| || | | Sbjct 63856 CAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGA 63915 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || ||||| ||||| ||||| || || || || ||| |||||| || || Sbjct 63916 CCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAG 63975 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT- 93270 ||||| |||||||| ||||| || | | || ||| | ||| | ||| || | Sbjct 63976 ATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA----CAAGATTTTTGGTC 64031 Query 93271 ---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||||||| | |||||| ||||| || || |||||||| | || || ||||| Sbjct 64032 AGAGATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGC 64091 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAA 93385 || ||| ||| | | ||| ||| | | | || | ||||| || ||||| | ||||| Sbjct 64092 GTCAAAGAGGAAGTTTCG-TCGAGC-AGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 64149 Query 93386 TACATTTCAGAATGGACATTCTCC 93409 || | || | |||| |||||| Sbjct 64150 TAGGTCTCGGCGTGGATGTTCTCC 64173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857340502280