Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 65.1_202017-07-20] 497 sequences; 18,521,151 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq103 199 7e-46 seq317 127 4e-24 >seq103 Length=98028 Score = 199 bits (220), Expect = 7e-46 Identities = 715/1094 (65%), Gaps = 43/1094 (4%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GC 221424 || ||||| || || |||| ||| || ||||| | |||| ||| || ||| | || Sbjct 84696 CCTTCGTAAGATTCATAGGTACCAAACTCCTCGGCAAGTTCGCATGAC-GCCTCAAGCGC 84638 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 |||||||| || ||||| |||||| | |||||| | | ||||| | || ||| Sbjct 84637 CGCGTGGTATATCGTCTCGAAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAA 84578 Query 221485 GGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 ||||| || || | |||||| ||||||| || ||||| || || | ||| | |||| Sbjct 84577 CGGCATGCGAAGGGCCATGAAAG-CGTCGGCAAGACCCTGGACACCAAGACCAACAGGCC 84519 Query 221544 TGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 || | | ||||||| |||| || || ||||| ||||| |||| | ||| | Sbjct 84518 GATGGCGCATGTTGGAGTTGCGG--GCCTCAGGCACTGGATAGTAGTTACGGGTGATTAC 84461 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 | ||| |||||| || | || || | |||| |||||| | |||| | Sbjct 84460 AGTGTCAAGGTTCTTTGTAACAACCTTGGTAATCTCGTGCAGCTTTT------TGAAGTC 84407 Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 | ||| | ||| | ||| || || || || || |||| || || || Sbjct 84406 ATAGACGC-GACGT--TCCAGG---TCTACGAAGGCAGGAAGAGCAAGAGAAGCAAGATT 84353 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 ||| || || || || || | ||||| ||||| || ||||||||||| ||| | Sbjct 84352 ACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTTCAGTACAGAGGTTACTGGA 84293 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 |||||||| || ||||| || || || |||||| |||||||| ||||||||| || Sbjct 84292 TTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGAT 84233 Query 221842 A-AAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CG 221899 ||||||| |||||||| |||||| | || || | ||| || | ||||| | Sbjct 84232 GTAAGGGACA-CCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCT-TCTGGGCT 84175 Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAAC 221959 | | || || | | |||| ||| | || | ||| ||| | ||||| Sbjct 84174 TTGATAGTTTTCCTTCCCTTGCCCTGCCTCT---CGTAGCTCTCATAAAGCTTTTCAAAT 84118 Query 221960 TTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGC 222019 | ||||||||| | ||| | || || || ||| |||||||||||| ||| |||| | | Sbjct 84117 TCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCC 84058 Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079 | | || ||| | || |||||| || || | |||||| || || | || ||||| Sbjct 84057 CCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCA 83998 Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCA 222139 | | || ||||||| || | ||| ||||| | || | || ||||| | ||| Sbjct 83997 CGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCA 83938 Query 222140 GCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCC 222199 |||||||| ||||| ||||||| ||| | || || || |||||||| ||||| ||||| Sbjct 83937 GCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCA 83878 Query 222200 AC-CATC---CTCTCCAGAGCGTTG-AAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254 || ||| || | |||| | ||| | || || | || | | |||||||| Sbjct 83877 ACGTATCGAGCTGT----GGCGTCGTAAGCT-CGGAGCATAGGAATGATGCCGTTGGAGT 83823 Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA--GACATG-C 222311 ||| ||||| || |||||| | || || | || || || | | | | | Sbjct 83822 AACCATTGGTACCGGCAATGTAGGAGCCCTTCGCAC---GGATATTGTGAATGTGAAGAC 83766 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | ||||||||||| || |||||| || ||| |||||||||| || ||| || | Sbjct 83765 CAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCAT 83706 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431 | || ||||| ||||| | | || || || || || ||||| || | | || | || Sbjct 83705 CAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTAC 83646 Query 222432 AGGCGTTAAACAGC 222445 |||||| || ||| Sbjct 83645 CGGCGTTGAAAAGC 83632 >seq317 Length=80037 Score = 127 bits (140), Expect = 4e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || |||||||| || | || |||||||| |||||||| ||||| ||| ||||| || Sbjct 64016 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 63957 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 ||| ||||||||||||| ||| || || |||||| || || ||| || |||||| Sbjct 63956 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAG 63897 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 |||||| | |||||||||||||||| || |||||||| || |||| ||| Sbjct 63896 CTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCAC 63844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839029551680