Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221
65.1_202017-07-20] 497 sequences; 18,521,151 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq103 116 5e-20
seq317 93.3 5e-13
seq435 89.7 6e-12
>seq103
Length=98028
Score = 116 bits (128), Expect = 5e-20
Identities = 177/252 (70%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|| || ||||| || || ||| ||| | | |||||||| || | || |||||||||
Sbjct 83883 TGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAG 83824
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
| || ||||| || || | ||||| ||| || || | ||||| | || ||
Sbjct 83823 TAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 83764
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || ||||| | ||||||||| | || || ||||| || |||||||| || ||
Sbjct 83763 ATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCA 83704
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| ||||| |||||||| ||||||| ||||| || || |||| || | | || |||
Sbjct 83703 ATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCG 83644
Query 1630306 GCGTTGAAGAGC 1630317
|||||||| |||
Sbjct 83643 GCGTTGAAAAGC 83632
>seq317
Length=80037
Score = 93.3 bits (102), Expect = 5e-13
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776
|||||||||||||| |||||| | ||| ||||||| |||||| | || |||||||
Sbjct 63538 CTCGAAAAAGTTGGCCTTGCCTTGGAGAGAGATCATCTCCATAAAGTCAAAGGGGTTGGC 63597
Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836
| || | ||| ||| || | | | || || |||||||| |||||||| ||
Sbjct 63598 AGAGTTCCAAATCTTCTCGTTGCCCAAAGCAACAAGAAGACGGTCGGCAACAAACTCAAT 63657
Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872
||| ||||||||||| ||||||||| ||||| ||
Sbjct 63658 GTATTGGCACATGAGCTTGGCGTTCATACCGATAAG 63693
>seq435
Length=123767
Score = 89.7 bits (98), Expect = 6e-12
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417
|| || || || || ||||||||||||||| | ||||||||||| ||||||| || ||
Sbjct 103000 CCCCGACCTTCCCATGCCGACTACACCTACCTTGCCAAGTACGGTGTCAAGGCCTCTTCT 102941
Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477
||||| || || |||| || || ||||| || || || || || |||||| | ||
Sbjct 102940 GGCGGTGGTCGTGCGTCCGCGCGTGAGACTATCGGACGAGTTGCGGCTGGCGCGATTGCG 102881
Query 18478 GAGAAAT 18484
|||||||
Sbjct 102880 GAGAAAT 102874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107098413852549
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |