Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 65.1_202017-07-20] 497 sequences; 18,521,151 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq103 168 8e-37 seq79 143 3e-29 seq317 114 2e-20 >seq103 Length=98028 Score = 168 bits (186), Expect = 8e-37 Identities = 716/1122 (64%), Gaps = 37/1122 (3%) Strand=Plus/Minus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||||||||| ||||||| | || | || ||||||||| || | | |||||||| Sbjct 84737 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 84678 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 ||| | || || | ||| || |||||| || | ||||| || || || || | Sbjct 84677 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 84618 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042 |||| | ||| | ||| | || ||| | || || || |||| || | || | Sbjct 84617 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 84558 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || | || || ||||| || ||||| | ||||| ||| | || ||||| || || Sbjct 84557 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA 84503 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || |||| || ||||| | || | | || || || || || || Sbjct 84502 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 84446 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||||||| ||| || || || || || |||| | ||| | |||| || | Sbjct 84445 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTC 84386 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || | ||||| || | || || | ||| || ||||| ||||| | | Sbjct 84385 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 84326 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 111336 ||||| | ||||| ||||| | ||| ||| || || || || | | |||||| Sbjct 84325 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 84269 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||| |||||||||||| ||||| || || ||||| || || Sbjct 84268 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 84209 Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 111453 | | ||| || || ||||| | || | |||| | | | | || ||| | || Sbjct 84208 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 84152 Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513 || | |||||| | || || |||||| || ||||| |||||| || || Sbjct 84151 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCC 84092 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || || | | ||||| | ||||| ||| | ||| | || || ||||||||||| Sbjct 84091 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 84032 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 ||| || | ||||| |||| | || ||||| | | || |||| || | ||| || Sbjct 84031 AAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 83972 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| || Sbjct 83971 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 83912 Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 || | || ||||| ||| |||||| || || || |||||||||| | Sbjct 83911 GAAGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTA 83855 Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807 | || ||||| ||||| || || | || | |||||| || || ||| || Sbjct 83854 AGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 83795 Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867 || || | | || || ||||| | |||||||| || || ||| ||||| || || Sbjct 83794 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 83735 Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927 ||| | | ||||| | |||||||| | || ||||| ||||| |||| | ||||| Sbjct 83734 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 83675 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 ||| ||||| || |||| || ||||| || ||||| || Sbjct 83674 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 83633 >seq79 Length=11841 Score = 143 bits (158), Expect = 3e-29 Identities = 296/432 (69%), Gaps = 14/432 (3%) Strand=Plus/Plus Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684 ||| ||||||||||| || | ||||| | | |||||||| | || |||||| || | Sbjct 3863 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3922 Query 181685 GTCTGGTTCAATGGAGCGT-CCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 ||||||||||| | || | ||||| ||| ||||||||||||| | | |||||| || Sbjct 3923 ATCTGGTTCAAT-GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 3981 Query 181744 GATCAAAGATCTTGCGAG-CCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAA 181802 | | ||||| |||| | ||| ||| ||| |||||||||||||| | | || Sbjct 3982 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCT 4040 Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862 |||||||||||||| ||||| ||||||||||| || || || || || || ||| Sbjct 4041 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 4100 Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACA----C 181918 ||||| || ||| | || || || ||||| | ||| | | | Sbjct 4101 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGGC 4156 Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCA 181977 |||||| ||||| || || | || |||| ||| || |||| ||| ||| || ||||| | Sbjct 4157 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGA 4215 Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037 |||| | ||||||| | ||| ||| || | | || || | ||| ||| |||| Sbjct 4216 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 4275 Query 182038 GACCATCCGCCA 182049 |||| || |||| Sbjct 4276 GACCGTCGGCCA 4287 >seq317 Length=80037 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||| ||||| || || || || || |||||| ||||| Sbjct 63858 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63917 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||||||||| |||||||| | ||| | || | ||| ||| || || |||||||||| Sbjct 63918 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 63976 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 |||||||||| ||||| |||| || || ||| |||| Sbjct 63977 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 64016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028098351200