Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 65.1_202017-07-20] 497 sequences; 18,521,151 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq317 102 6e-17 >seq317 Length=80037 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || ||||| || || || ||||| || || | Sbjct 78040 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 78099 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || || ||||| || ||| | || || || || Sbjct 78100 GATACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCA 78158 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || ||||| || ||||| ||||||| || ||| | ||||||||| Sbjct 78159 GCAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAA 78218 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 78219 TATCCAAAAGGAGTCCAC 78236 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || ||||| || |||||||||||||| || || | Sbjct 78547 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 78606 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || |||| | || ||| ||||| |||||| | || || ||||| Sbjct 78607 GACACTATCGACAACGTTAAGGC-GAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 78665 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || ||||| || |||||||| || || | || ||| | ||| ||||| Sbjct 78666 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 78725 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 78726 CATCCAAAAGGAATCTAC 78743 Score = 100 bits (110), Expect = 2e-16 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || ||||| || |||||||| || ||||| ||| | Sbjct 78268 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 78327 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || ||| ||||| || ||| | || || || || Sbjct 78328 GACACCATTGACAATGTCAAGGC-GAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCA 78386 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||| || || || || ||||| || |||||||| || | || ||||| ||||||| Sbjct 78387 ACAACGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTACA 78445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007552612476