Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 65.1_202017-07-20] 497 sequences; 18,521,151 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq317 154 4e-32 seq68 132 1e-25 >seq317 Length=80037 Score = 154 bits (170), Expect = 4e-32 Identities = 168/222 (76%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| ||||| ||||| ||||| || ||||| || ||||| || || ||| ||| Sbjct 78043 CAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC--- 78099 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||| || ||||| ||||| || ||||| || || |||||||| |||||| Sbjct 78100 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 78159 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||| | || ||||||||||| || || ||||| || | |||||| ||||||| || Sbjct 78160 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 78219 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||| || || || || ||||| || ||| | ||| || Sbjct 78220 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGA 78261 Score = 150 bits (166), Expect = 4e-31 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || ||||| || || ||||| || ||| Sbjct 77764 CAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCCGAC 77823 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || |||||||| ||||||||| Sbjct 77824 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAA 77883 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | ||||| || || || ||||| |||||||| |||||||| |||| || Sbjct 77884 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTA 77936 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || ||||| || ||||| ||||| || || || ||| Sbjct 78550 CAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCTGAC 78609 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| ||||| || ||||| || |||||| Sbjct 78610 ACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 78669 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || ||||| || || ||||| | |||||| |||| || ||| || Sbjct 78670 CGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATC 78729 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || || |||||| Sbjct 78730 CAAAAGGAATCTACCCTTCACCTTGTT 78756 Score = 141 bits (156), Expect = 2e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || ||||| || ||||| || ||||| ||| ||| ||| Sbjct 78271 CAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCTGAC 78330 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || |||||||| ||||| ||| Sbjct 78331 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAACAA 78390 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | |||||||||||||| || || || ||||| | ||| | | ||||| Sbjct 78391 CGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTA 78443 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGT 177997 ||| || || || || ||||| || || || ||| ||| || |||||||| || || Sbjct 78848 TCTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGC---GATACCATCGACAATGT 78904 Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057 ||| ||||| || ||||| || || ||||| || || ||||||||||| |||||||| Sbjct 78905 CAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGC 78964 Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 ||||||||| || |||||||| | |||||| ||||||| || | ||||| || || || Sbjct 78965 CGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCAC 79024 Query 178118 ACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || ||| | ||| || Sbjct 79025 TCTCCATCTCGTCTTGCGTCTCCGA 79049 >seq68 Length=80302 Score = 132 bits (146), Expect = 1e-25 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || ||||| || |||||||||||||| || ||| ||||||||||| || ||||| Sbjct 65452 TCTTACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAA 65393 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| |||||||| || || ||||| || ||||| || ||| | ||||||||||| Sbjct 65392 GTCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAACAGCGATTGATCTTCGCCGG 65333 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| |||||||| || || ||||| ||| | || || Sbjct 65332 AAAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 65297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723534865418