Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022222 45.1_202017-07-20] 465 sequences; 18,610,299 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq296 125 8e-24 >seq296 Length=296332 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | |||||| || | ||| | ||| ||||||||| ||||||||||| | Sbjct 77963 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 77904 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || || ||||| || ||||| || | |||||||||||| | || Sbjct 77903 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 77844 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||| || |||| | | | || ||||||||||| || Sbjct 77843 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACT 77784 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||||||||| || || || || || ||||||||||| Sbjct 77783 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77737 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | |||||| || | ||| | ||| ||||||||||||||||||||| | Sbjct 78751 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 78692 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || || || || || ||||| |||||||| ||||| || | || Sbjct 78691 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 78632 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||| || |||| | | | || ||||||||||| || Sbjct 78631 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACT 78572 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAG 43162 || | ||||| || || ||||| || Sbjct 78571 TCAAGAGTGATTGTCTTACCCGTAAG 78546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814276310200