Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022222 45.1_202017-07-20] 465 sequences; 18,610,299 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq46 138 2e-27 seq42 111 3e-19 seq411 93.3 9e-14 >seq46 Length=78481 Score = 138 bits (152), Expect = 2e-27 Identities = 240/349 (69%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 218507 TCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGC 218566 ||||| || | || || || |||||||||| ||||| ||||| | |||| | Sbjct 71002 TCCCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTCTTCTCCATGGCTGATAATATCC 70943 Query 218567 GTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG 218626 | || ||||| |||| || || ||||| || ||||| ||| | ||||||| Sbjct 70942 GATCGATTCCATCTGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTT 70883 Query 218627 CATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686 |||||||| ||||| ||||||| |||||||||||| || | || || || || | Sbjct 70882 GTTTCAAGCGAAACCTCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGG 70823 Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746 | | | | || || || ||||| ||| || ||||||| ||| | |||| Sbjct 70822 AGAAAACCGCATATCACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCAC 70763 Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806 | ||| || |||||||||||||| || ||||| |||||||| || |||||| ||| Sbjct 70762 AAAACTTCGTCGGCAGTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTC 70703 Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855 |||| ||||| || || ||||||||| | |||||||| ||||| Sbjct 70702 GTCTTGCAGGTGGTAAAGACGCAGCTTCTGCCCGTTATATCTTCACAAA 70654 >seq42 Length=242864 Score = 111 bits (122), Expect = 3e-19 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||| ||||| ||| | ||||| |||||||| | || |||| ||||| ||||| || Sbjct 53536 TTGGTCCCAACGGTTCCGGTAAATCTACCCTTGTTAAGCTCCTCACTGGTGAGACTGAGC 53477 Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 ||| ||| | |||| | | |||||||| || ||| || || | ||||||||| || | Sbjct 53476 CCAACCTGGGCGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAAC 53417 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 |||||||||||||||| || |||||||| ||| ||||| Sbjct 53416 ACGCTTTCCACCACATTGACAACCACCTTGACTCTACTCC 53377 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 |||||||| || || || |||||||||||||| || || | || || ||||| | Sbjct 54017 GGTTCTCTTTCTGGCGGCTGGAAGATGAAGCTTGCTCTTGCCCGAGCTATTCTCTTCAAG 53958 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| |||| || ||||| ||||||||| |||| ||||| | |||| Sbjct 53957 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 53898 Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 || | ||| || ||| || | ||| | | ||| ||||||||||||||||||| Sbjct 53897 CTGATCAACTATCTCACCTCCCTTACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 53839 Query 279878 TGGCTTCCT 279886 || |||||| Sbjct 53838 TGACTTCCT 53830 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 280719 GGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGC-AACACCC 280777 |||||||| || || |||||||| || | ||| |||| || ||| |||| || |||| Sbjct 52923 GGTCTTTCCGGTGGTCAGAAGGTTAAGGTCGTCCTCGGTGCCGCTACCTGGCGAAGACCC 52864 Query 280778 TCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 ||| | ||| |||||||||||||||||||||||| ||||| ||| Sbjct 52863 -CACATCATCTGTCTCGACGAGCCTACCAACTATCTCGACCGAGAG 52819 >seq411 Length=186131 Score = 93.3 bits (102), Expect = 9e-14 Identities = 136/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | |||||||| ||||| ||||| |||||||| ||||| |||| || || ||| Sbjct 165182 GGTATCGTCGGACCCAACGGTGCCGGTAAATCTACCCTCATCAAGCTCCTCACCGGTGAG 165241 Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 || | | || || || || || ||||| ||| | || | | ||| ||| Sbjct 165242 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCACCCCGCTCTTCGTGTAGGTTATGTC 165298 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| || |||||||| ||| | | ||| |||||| ||| || || |||||| Sbjct 165299 GCTCAGCATGCGTTCCACCATATCAACCAGCACTTGGACAAAACTGCTGTGCAGTACATT 165358 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 165359 CAGTGGCGATA 165369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830676341065