Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022222 45.1_202017-07-20] 465 sequences; 18,610,299 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq80 203 3e-47 >seq80 Length=111118 Score = 203 bits (224), Expect = 3e-47 Identities = 480/725 (66%), Gaps = 0/725 (0%) Strand=Plus/Plus Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAG 93963 || |||||||| || || || || || ||||| || || ||||| || | | ||| Sbjct 96711 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 96770 Query 93964 GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATAC 94023 | |||||||| || || | ||| | |||||| |||||| ||||| || Sbjct 96771 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 96830 Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 || || || || || | | ||| | | ||||| | ||| |||||||| |||| Sbjct 96831 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 96890 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 |||||||| |||||||||| || | ||||||||||| | | | || | | || || Sbjct 96891 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 96950 Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 ||||| || || |||||| | | | ||| | ||||| ||||||| ||||| ||| Sbjct 96951 TACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGG 97010 Query 94204 CACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGG 94263 ||||| || || | ||||| ||| | | |||||||| || || || || | Sbjct 97011 CACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGA 97070 Query 94264 GCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAA 94323 || | || || |||||||| |||||| | | || ||||| ||||| || ||||| Sbjct 97071 GCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCC 97130 Query 94324 AACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGA 94383 | | |||| |||| | |||||| || || || ||||| ||||||||| || Sbjct 97131 GATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTACGGT 97190 Query 94384 TCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATG 94443 |||||| | | |||| | ||||| ||||||||||| ||||| ||| Sbjct 97191 GAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATC 97250 Query 94444 GATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTAC 94503 | || |||||| ||| ||| | || | || ||||| ||| || ||| Sbjct 97251 AAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTAC 97310 Query 94504 ATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAG 94563 |||| | |||||| ||| |||| ||||||||||||| ||||||| || ||||| Sbjct 97311 ATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAA 97370 Query 94564 AGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGT 94623 | || || || || || || | |||||| ||||||| || || ||||||| ||| Sbjct 97371 TCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGT 97430 Query 94624 AACCT 94628 || || Sbjct 97431 AATCT 97435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720324421400