Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022222
45.1_202017-07-20] 465 sequences; 18,610,299 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq80 174 2e-38
seq296 161 1e-34
seq46 102 1e-16
>seq80
Length=111118
Score = 174 bits (192), Expect = 2e-38
Identities = 721/1121 (64%), Gaps = 35/1121 (3%)
Strand=Plus/Plus
Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785
|| |||||||| ||||| || ||||||||||||| || ||||| | || | |||
Sbjct 96711 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 96770
Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845
|| || || || |||| || |||| ||||||| ||||| || ||||| |||
Sbjct 96771 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 96830
Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903
|| |||||||| || | ||||| || || || | || || | ||| || || |
Sbjct 96831 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAG--GGCTCCTACATTGCCG 96888
Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963
|||| |||||| | || | || || ||||| ||||| || | | |||||||||| |
Sbjct 96889 GTACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTC 96948
Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017
| || || | |||| ||| | |||| | || |||| ||||||||||||
Sbjct 96949 GATACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGC 97005
Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077
| |||||||| ||| | | || ||| |||| || | ||||| ||| | |||||||
Sbjct 97006 CTTGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGG 97065
Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137
|| || ||||| |||| ||| |||||||| | ||||| ||||||||| | || |
Sbjct 97066 TACGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCG 97125
Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197
| ||| ||||| |||| | ||||| | | || || || || |||| |
Sbjct 97126 AATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTT 97185
Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CG 112256
||||| || |||||| || || | ||||| || | | | | | || |
Sbjct 97186 ACGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAA 97244
Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315
|| | ||| | || | | ||| || || ||| || |||||||||||||||||
Sbjct 97245 ACTATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGT 97303
Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375
|| || || ||||| || || ||| ||| || |||||| | | |||
Sbjct 97304 CCCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTAC 97363
Query 112376 GATCAA---GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432
||||| ||| ||||||||||| |||||| |||| | | | |||||
Sbjct 97364 CATCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGT 97420
Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-A 112491
||||| ||||| || || || | ||||| || | || || || | || |
Sbjct 97421 TGCTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGA-CCTGGAACGTCGCG 97479
Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551
| ||| | |||| || ||||| |||| || ||| ||||| ||||| ||| |
Sbjct 97480 TCTATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTG 97539
Query 112552 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 112608
| || | || | || || || |||| || || || || || ||| | || |
Sbjct 97540 TAATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATC 97596
Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668
| || ||||||| |||||||| ||||| || || | ||||| |||| | |
Sbjct 97597 GGCCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGT 97656
Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728
| || |||| || || | |||| ||||| | || || ||||| || || ||||| |
Sbjct 97657 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGG 97716
Query 112729 CTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788
| ||||||||| | || | || |||| |||| | |||||| | | || ||||
Sbjct 97717 CGCTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTT 97776
Query 112789 CTCCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGG 112827
|||| | || | ||||| | ||||| | || |||||||
Sbjct 97777 CTCC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 97815
>seq296
Length=296332
Score = 161 bits (178), Expect = 1e-34
Identities = 214/289 (74%), Gaps = 10/289 (3%)
Strand=Plus/Minus
Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 102106
||||| |||| || |||||||| |||| || ||| | | ||||||| || || |
Sbjct 63839 CTCATCGACACCTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 63781
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 102163
|| |||| ||||| | |||||| || || |||||| | ||| | ||| |||
Sbjct 63780 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 63721
Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
|| ||| | || ||||||||| | || ||||| || |||||||||||||||||
Sbjct 63720 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 63664
Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282
|||||| ||| ||| | || | ||||| |||||||||||||||||||| ||||| ||
Sbjct 63663 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCT 63605
Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||| |||||||| |||||||| |||||||| |||||| || |||||
Sbjct 63604 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 63556
>seq46
Length=78481
Score = 102 bits (112), Expect = 1e-16
Identities = 282/427 (66%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 175840 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 175899
||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | |
Sbjct 70503 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70562
Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959
||||| |||||| | |||||| || |||| |||||||| | |||||| ||
Sbjct 70563 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 70622
Query 175960 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018
| ||||| ||| | |||| || || ||||| |||||||| | | || |
Sbjct 70623 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGGGCAGAAGCTG 70681
Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078
| || |||||||| ||||| |||||||| || || || || || |||||||| |
Sbjct 70682 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 70741
Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138
|||| || | | ||| | || || |||||| ||| | | | | ||||||
Sbjct 70742 TGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCAC 70801
Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197
| ||||| || || | ||||| | || | |||| ||| ||| || || || || ||
Sbjct 70802 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 70860
Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257
| |||| || | |||||| | | | |||||| || || ||| ||||||||
Sbjct 70861 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 70920
Query 176258 TCCGCCA 176264
|| ||||
Sbjct 70921 TCGGCCA 70927
Score = 82.4 bits (90), Expect = 9e-11
Identities = 117/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 176921 AGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTT 176980
|||||||| || || || | ||| || || || || | ||||| | ||| ||||| | |
Sbjct 71684 AGAGGGAAAACGCCATACTCATCACGTCCGACAACTGCAAGACCAGAAACGGCGAGAGCT 71743
Query 176981 TTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCC 177037
|| |||||||| || || |||| |||||| || || |||| || || |||| ||
Sbjct 71744 TTGGCAGAATCTCCTTCCGTCAGGATGAGAGTGCAGTTCTTGG-AGTTTCGGCCG--CCA 71800
Query 177038 GCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAATTTTG 177079
|| ||||||||||| || | || |||||||| |||| ||
Sbjct 71801 GCATTGTTCGCATCTTCAAGCTTTACAATACCAGAAATTCTG 71842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620738791934800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |