Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022222 45.1_202017-07-20] 465 sequences; 18,610,299 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq80 134 2e-26 seq46 129 7e-25 seq296 114 2e-20 >seq80 Length=111118 Score = 134 bits (148), Expect = 2e-26 Identities = 708/1119 (63%), Gaps = 31/1119 (3%) Strand=Plus/Plus Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 || ||||| || ||||| || |||| || ||||| |||||||| | |||| ||| Sbjct 96711 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 96770 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| || | |||||||| | ||||| | | ||||| || ||||| ||| Sbjct 96771 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 96830 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 || || |||||||| | ||||| || || | | || || || ||| || Sbjct 96831 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 96890 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || |||||| | || | || || ||||| ||||| || | | |||||||||| || Sbjct 96891 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 96950 Query 75566 TATGTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCA 75619 || || |||||| || | |||| | || || |||| |||| | || || Sbjct 96951 TACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 97007 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 ||||| || ||| | | || ||| |||| ||| | ||||| ||| | || |||| Sbjct 97008 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 97067 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | ||||| || | |||| ||||| | || |||||||||||||| || || Sbjct 97068 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 97127 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 | ||| | ||| ||||| | ||||| | | || || || || |||||| Sbjct 97128 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 97187 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATG-CGA 75857 ||||| || |||||| || || | || | ||||| |||| | || || | | Sbjct 97188 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACG-AGAGGCAGGGCA-AGGGAAGGAAAA 97245 Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 || | |||| | || | ||||| || || ||| | | || || |||||||| Sbjct 97246 CTATCAAAGCC-CAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTC 97304 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || || || |||||||||||| ||| ||| ||||||||| | | || || Sbjct 97305 CCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACC 97364 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||||| | || || || || ||||| | ||||| | | ||||| ||| Sbjct 97365 ATCAAATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCT 97424 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096 || || ||| | || || | || ||||| | || | || |||| | | Sbjct 97425 GTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTGGAACGTCGCGTCTAT 97484 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 || | |||| || || || || || ||| ||||||| || || || || || || Sbjct 97485 GACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATC 97544 Query 76157 GACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 | | || | ||||| || |||| || || || || || ||||| || | ||| Sbjct 97545 ACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGGCCT 97601 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----T 76268 ||||| | ||||| || ||||| || || | ||| || | || |||| | Sbjct 97602 GTTGGTCTTGGTGTCCAGGGTCTTGCCGACG-----CTTTCATGGCCCTTCGCATGCCGT 97656 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 | || || | ||| || | ||| | ||| | ||||| || || || || ||||| Sbjct 97657 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGG 97716 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 | || |||||| || ||| | || || | ||| ||||||| | | || |||| Sbjct 97717 CGCTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTT 97776 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 ||||| || | || | ||||||| || ||||||| Sbjct 97777 CTCCCATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 97815 >seq46 Length=78481 Score = 129 bits (142), Expect = 7e-25 Identities = 288/427 (67%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417 |||| || |||||||| ||| ||| | || || | | || ||| ||| | || | Sbjct 70927 TGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGTTTCAAGCGAAACC 70868 Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477 ||| | ||||| ||||| || || || || | || || |||| || | || || | Sbjct 70867 TCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGGAGAAAACCGCATATC 70808 Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537 |||||||||||| || | ||| ||||| || ||| | ||| | || Sbjct 70807 ACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCACAAAACTTCGTCGGCA 70748 Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597 |||||||| || || || || || || ||||||||||| ||||| ||||||| Sbjct 70747 GTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTCGTCTTGCAGGTGGTA 70688 Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGG-CTCGCAAGATC 14656 | || || || | | || || |||||||| ||| ||| ||| | |||| ||| Sbjct 70687 AAGACGCAGCTTCTGCCCGTTATATCTTCACAAACCTT-CCACGGATGACTCGAGCAATC 70629 Query 14657 TTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGG-ACGCTCCATTGA 14715 || | ||| |||||| | | ||||||||||||| ||| ||||| | || | ||||| Sbjct 70628 TTCCACCCTGCAGATGACGGGTTGCTCAACTACTTGGTCGAGGATGGTATGCGC-ATTGA 70570 Query 14716 ACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGG 14775 |||||| | || |||||| || | |||||||| | | ||||| | || |||||||| Sbjct 70569 ACCAGATTATTTCATGCCCACCGTTCCAATGGTATTGATCAATGGTGCAGATGGTATCGG 70510 Query 14776 TACGGGT 14782 ||| ||| Sbjct 70509 TACTGGT 70503 >seq296 Length=296332 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 |||| |||||| || |||| ||||| |||||||||||||||||||| || || ||| Sbjct 63713 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 63654 Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 ||| | || | ||| | |||||||| ||||||||||| || || |||||| || || Sbjct 63653 -GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGA 63595 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || ||||| |||||||||||| || |||||| Sbjct 63594 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 63555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566132439200