Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022222 45.1_202017-07-20] 465 sequences; 18,610,299 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq296 111 2e-19 seq46 93.3 4e-14 >seq296 Length=296332 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| || || |||||||||||| | || || || || || || ||||| | Sbjct 77933 GTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCG--TCTTCAAGTTGCTTTC 77876 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| |||||||| || |||||||| |||||| || Sbjct 77875 CGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCT 77816 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || ||| | | || || || | ||| | |||||||||||| || | Sbjct 77815 TGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGG 77756 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 77755 TTTTGACGAAGATTTGCAT 77737 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| || ||||| || ||| | || | || || ||||| |||||||| || |||||| Sbjct 78119 TCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTTG 78060 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||| | || || || || | |||| Sbjct 78059 TCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGATA 78000 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| || |||||||||||||| Sbjct 77999 GTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77965 >seq46 Length=78481 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| || ||| | || | ||||| ||||| || ||||| || ||||| Sbjct 51545 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGGGGGATACCCTCCTT 51604 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| || ||| || |||| ||||| Sbjct 51605 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGAT 51664 Query 133625 GGTTTTGCCGGTCAGA 133640 ||| || ||||| ||| Sbjct 51665 GGTCTTTCCGGTAAGA 51680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417990116600