Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022222 45.1_202017-07-20] 465 sequences; 18,610,299 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq80 192 7e-44 seq296 161 1e-34 seq46 98.7 1e-15 >seq80 Length=111118 Score = 192 bits (212), Expect = 7e-44 Identities = 805/1255 (64%), Gaps = 37/1255 (3%) Strand=Plus/Plus Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 || ||||| || ||||| || ||||||||||||| |||||||| | |||| ||| Sbjct 96711 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 96770 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || ||||| || | |||||||| | ||||| | | ||||| || ||||| ||| Sbjct 96771 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 96830 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 || || |||||||| | ||||| || || | | || || || ||| || Sbjct 96831 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 96890 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || |||||| | || | || || ||||| ||||| || | | |||||||||| || Sbjct 96891 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 96950 Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 || || |||||| ||| ||||| || | |||| ||||||||||||| Sbjct 96951 TACGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCT 97007 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 |||||||| ||| | | || ||| |||| || | ||||| ||| | ||||||| Sbjct 97008 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 97067 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || || ||||| |||| ||| |||||||| | ||||| ||||||||| | || || Sbjct 97068 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 97127 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| ||||| |||| | ||||| | | || ||||| || |||| | Sbjct 97128 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 97187 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG-CGAC 104868 ||||| || |||||| ||||| | ||||| || | ||| | | || | || Sbjct 97188 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAAAC 97246 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | ||| | || | | ||| || || ||| || ||||||||||||||||| | Sbjct 97247 TATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCC 97305 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | ||||| ||||| || || ||| ||| || |||||| | | ||| | Sbjct 97306 CTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCA 97365 Query 104988 TCAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 |||| ||| || |||||||| |||||| |||| | | | ||||| | Sbjct 97366 TCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTG 97422 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACA 105103 |||| ||||| || || || | ||||| || | || || || | || | Sbjct 97423 CTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGA-CCTGGAACGTCGCGTC 97481 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | ||| | |||| || ||||| |||| || ||| || || ||||| ||| || Sbjct 97482 TATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTA 97541 Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 || | || | || || || |||| || || || || || ||| | || || Sbjct 97542 ATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGG 97598 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280 || ||||||| ||||| |||||||| || || | ||||| |||| | || Sbjct 97599 CCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTC 97658 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || |||| || || | |||| ||||| | || || ||||| || || ||||| || Sbjct 97659 GACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCG 97718 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 ||||||||| | || | || |||| |||| | |||||| | | || |||||| Sbjct 97719 CTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCT 97778 Query 105401 CCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGGAAGGTG---AGACCAAGCTTC 105455 || | || | ||||| | ||||| | || ||||||| ||| ||| | ||| Sbjct 97779 CC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTT- 97835 Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515 | |||||| || || |||| ||| |||| ||| | | ||| | | | Sbjct 97836 --TGGGACTGGACAGAGCTGAAGGCCAAGATCGCACAGAACGGTGTGAGGAACTCTTTGC 97893 Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 || | || || ||||| || ||||| || | |||||||||||| || ||||| Sbjct 97894 TCGTCGCCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGGTTGGAACGAATG 97948 >seq296 Length=296332 Score = 161 bits (178), Expect = 1e-34 Identities = 214/289 (74%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 94730 ||||| |||| || |||||||| |||| || ||| | | ||||||| || || | Sbjct 63839 CTCATCGACACCTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 63781 Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 94787 || |||| ||||| | |||||| || || |||||| | ||| | ||| ||| Sbjct 63780 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 63721 Query 94788 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 || ||| | || ||||||||| | || ||||| || ||||||||||||||||| Sbjct 63720 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 63664 Query 94848 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906 |||||| ||| ||| | || | ||||| |||||||||||||||||||| ||||| || Sbjct 63663 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCT 63605 Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| |||||||| |||||||| |||||||| |||||| || ||||| Sbjct 63604 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 63556 >seq46 Length=78481 Score = 98.7 bits (108), Expect = 1e-15 Identities = 281/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 168277 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 168336 ||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | | Sbjct 70503 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70562 Query 168337 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 168396 ||||| |||||| | |||||| || |||| |||||||| | |||||| || Sbjct 70563 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 70622 Query 168397 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455 | ||||| ||| | |||| || || ||||| |||||||| | | || | Sbjct 70623 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGGGCAGAAGCTG 70681 Query 168456 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 168515 | || |||||||| ||||| |||||||| || || || || || |||||||| | Sbjct 70682 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 70741 Query 168516 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 168575 |||| || | | ||| | || || |||||| ||| | | | | |||||| Sbjct 70742 TGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCAC 70801 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 168634 | ||||| || || | ||||| | || | |||| ||| ||| || || || || || Sbjct 70802 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 70860 Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694 | |||| || | ||| || | | | |||||| || || ||| |||||||| Sbjct 70861 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 70920 Query 168695 TCCGCCA 168701 || |||| Sbjct 70921 TCGGCCA 70927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257409796600