Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq729 143 3e-29 seq424 109 7e-19 >seq729 Length=118376 Score = 143 bits (158), Expect = 3e-29 Identities = 184/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| ||||||||||||| | || | |||||||| || || || Sbjct 63665 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63724 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || || ||||| |||||||| || ||||| ||||| || || || ||||| Sbjct 63725 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63784 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757 ||| || || || |||||||| ||||| |||| ||| || ||| | | |||| Sbjct 63785 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63844 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 63845 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63904 Query 33818 AAAGAGATAGTTT 33830 |||||| ||||| Sbjct 63905 AAAGAGGAAGTTT 63917 >seq424 Length=150651 Score = 109 bits (120), Expect = 7e-19 Identities = 594/953 (62%), Gaps = 69/953 (7%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || || || |||| | | | | || ||| || || | |||||||| | | Sbjct 14640 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14699 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306 ||| || || || | || || ||||| || ||||| | ||||| || || || || Sbjct 14700 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14759 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63365 | ||||| | | || ||||| || || ||||| ||||| || | ||| | Sbjct 14760 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14817 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | ||||| ||||| || || | || ||||| | | ||||| || ||||| || Sbjct 14818 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14877 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || ||||| Sbjct 14878 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14937 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAG 63544 || |||||||||||||| || ||| || | ||||| ||||| ||| ||| || Sbjct 14938 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14996 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| || || || || | || ||||| || || || | || || ||||| || Sbjct 14997 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 15056 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 || ||| ||||| ||||| | || || || ||||||||| | || | ||| Sbjct 15057 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 15116 Query 63665 TCCCGCATTAAA------------------------------------------------ 63676 || || || || Sbjct 15117 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 15176 Query 63677 -TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735 || ||||| ||||| || || || | | ||||| | ||||| || ||||| || Sbjct 15177 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15236 Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795 || ||| || | | ||| || || || ||||| ||||| | |||||||||||| | Sbjct 15237 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15296 Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 || ||||| ||| || || | | | ||| ||| | || | ||| || ||||| | Sbjct 15297 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15356 Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATT 63915 | |||||||| | |||||||| || || |||||| | || | ||| ||||||| | Sbjct 15357 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GT 15413 Query 63916 TGTTAACTATATCCATG-----GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTT 63970 ||| | | | || || || || | ||| || |||||||| || || | || Sbjct 15414 TGTCCATGACAACCTTGTAGACGTCATCAT--CAATCATGGGAGAATGCTTGCCGGTCTT 15471 Query 63971 AGGATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCC 64028 || || || | || || || || | | || || || | || || || ||| Sbjct 15472 GGGGTTGACCCA--TGCATGAAGGTCATGTACGACGGCAGAGAAGACCTTCTTGGTCTCC 15529 Query 64029 TTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 || || || || || || || |||| ||| || || || |||||||||||||| Sbjct 15530 TTATGAAGGTTGGAAATAGCGATTCGGGCAGCAAGGATAGCATAATCCGGATG 15582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809317898560