Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq729 113 5e-20 >seq729 Length=118376 Score = 113 bits (124), Expect = 5e-20 Identities = 222/324 (69%), Gaps = 12/324 (4%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||||| || | ||| |||||||| || || | ||| || ||| || | | Sbjct 63666 CAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGA 63725 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || ||||| ||||| ||||| || || || || ||| |||||| || || Sbjct 63726 CCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAG 63785 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT- 93270 ||||| |||||||| ||||| || | | || ||| | ||| | ||| || | Sbjct 63786 ATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA----CAAGATTTTTGGTC 63841 Query 93271 ---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||||||| | |||||| ||||| || || |||||||| | || || ||||| Sbjct 63842 AGAGATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGC 63901 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAA 93385 || ||| ||| | | ||| ||| | | | || | ||||| || ||||| | ||||| Sbjct 63902 GTCAAAGAGGAAGTTTCG-TCGAGC-AGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 63959 Query 93386 TACATTTCAGAATGGACATTCTCC 93409 || | || | |||| |||||| Sbjct 63960 TAGGTCTCGGCGTGGATGTTCTCC 63983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853477280480