Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq424 174 2e-38 seq729 122 1e-22 seq335 114 2e-20 >seq424 Length=150651 Score = 174 bits (192), Expect = 2e-38 Identities = 719/1120 (64%), Gaps = 33/1120 (3%) Strand=Plus/Plus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||| || |||| |||||||| | || || || || || | | ||||| | Sbjct 14027 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 14086 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 || |||| || | |||| | |||||| || || ||||| || || ||||| | Sbjct 14087 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 14146 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAAA 116239 | || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 14147 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCA--- 14203 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 | || | || || ||||| |||||||| || |||| || ||||| | ||| || || | Sbjct 14204 TGAAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGT 14263 Query 116300 TTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 | || || ||| ||| ||||| | || | ||| || | | || || || | Sbjct 14264 TGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTG 14320 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416 | |||||||| || || || || ||||||| | | ||| | |||| || | | Sbjct 14321 TAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTA 14380 Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476 | | |||||| || | || || |||||||| |||| ||||| | || | Sbjct 14381 CGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAAT 14440 Query 116477 ACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||| || ||||| ||||| | || || | | | ||||| || | || |||||| || Sbjct 14441 ACTCCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTT 14498 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||||| | ||| |||||||||||| || || || || ||||| ||||| | Sbjct 14499 GGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGC 14558 Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG-TGGCGTTGGCTCGCCCCTCC 116652 || ||| || || ||| | | || | |||| | || | | || || |||| || Sbjct 14559 CTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCC 14617 Query 116653 TCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGT 116712 | |||||| | || || ||||| |||||||| | | || | || || || Sbjct 14618 T-CTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGG 14676 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 || | ||||| | |||| ||| | ||| | || || ||||||||||| || Sbjct 14677 CACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGA 14736 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || | ||||||||| || |||| ||||| ||| || | || || | || || || Sbjct 14737 TCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTC 14796 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 | || || | ||||| | | ||| |||||||| || || || || | |||| Sbjct 14797 TTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAG 14856 Query 116893 G-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946 | || | |||| |||| | || | || || | || || |||| | | Sbjct 14857 GCACCAGGACGCTTG---TTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCT 14913 Query 116947 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGT 117004 || ||||| |||||||| || | || | ||||| || || || || ||| | | Sbjct 14914 CGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CT 14971 Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064 | || | || || ||| ||||| | ||||||||| || || ||| ||||| || || | Sbjct 14972 TCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCAC 15031 Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124 | | ||||| | ||||||| ||||| || |||||| |||| | || | |||||||| Sbjct 15032 AGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGC 15091 Query 117125 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 | |||||||| || | || ||||| |||||||| || Sbjct 15092 ATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15131 >seq729 Length=118376 Score = 122 bits (134), Expect = 1e-22 Identities = 121/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||||||||||||||| || |||||||| || || |||||| ||||| Sbjct 63669 GCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACCA 63728 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| |||||||| | |||||| || | | | ||| || |||||||||||||| Sbjct 63729 GGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGAT 63787 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG 127672 |||||||| || || |||| || |||||| Sbjct 63788 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCG 63821 >seq335 Length=12122 Score = 114 bits (126), Expect = 2e-20 Identities = 287/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806 ||| || || ||||| || | || || | | |||||||||| || ||||| | | Sbjct 8696 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 8637 Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 ||||||||||| |||| ||||| ||| |||| |||||||||| |||||| | Sbjct 8636 ATCTGGTTCAATGCGCA-TACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 8578 Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924 | | |||||| |||| ||||| ||| || ||||||||||| || | | || Sbjct 8577 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCT 8519 Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 || ||||| ||||| ||||| || |||||||| || || || || |||||||| Sbjct 8518 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 8459 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||| | ||| | || || |||||| || | | | ||||| Sbjct 8458 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 8399 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103 || || || || || | || |||| || || |||| ||| ||| || ||||| || || Sbjct 8398 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 8340 Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163 | ||||||| | ||| || || | | ||||||| ||| ||| ||||| || Sbjct 8339 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 8280 Query 176164 GTCGGCCA 176171 |||||||| Sbjct 8279 GTCGGCCA 8272 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 176797 AGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACC 176856 ||| ||||| ||||| | || || | ||||||||| || || || | |||||| || Sbjct 7546 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 7487 Query 176857 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 176916 || || | ||||||| ||| ||||| | || || ||||| || ||||||| |||||| Sbjct 7486 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 7427 Query 176917 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 176974 || || || | || || |||| || || ||||||||||| || | ||| |||| Sbjct 7426 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 7369 Query 176975 CCAGTAATTTTG 176986 |||| |||| || Sbjct 7368 CCAGAAATTCTG 7357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499132380320