Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq424 174 2e-38
seq729 161 1e-34
seq335 102 1e-16
>seq424
Length=150651
Score = 174 bits (192), Expect = 2e-38
Identities = 721/1121 (64%), Gaps = 35/1121 (3%)
Strand=Plus/Minus
Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785
|| |||||||| ||||| || ||||||||||||| || ||||| | || | |||
Sbjct 15131 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 15072
Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845
|| || || || |||| || |||| ||||||| ||||| || ||||| |||
Sbjct 15071 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 15012
Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903
|| |||||||| || | ||||| || || || | || || | ||| || || |
Sbjct 15011 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAG--GGCTCCTACATTGCCG 14954
Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963
|||| |||||| | || | || || ||||| ||||| || | | |||||||||| |
Sbjct 14953 GTACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTC 14894
Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017
| || || | |||| ||| | |||| | || |||| ||||||||||||
Sbjct 14893 GATACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGC 14837
Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077
| |||||||| ||| | | || ||| |||| || | ||||| ||| | |||||||
Sbjct 14836 CTTGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGG 14777
Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137
|| || ||||| |||| ||| |||||||| | ||||| ||||||||| | || |
Sbjct 14776 TACGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCG 14717
Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197
| ||| ||||| |||| | ||||| | | || || || || |||| |
Sbjct 14716 AATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTT 14657
Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CG 112256
||||| || |||||| || || | ||||| || | | | | | || |
Sbjct 14656 ACGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAA 14598
Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315
|| | ||| | || | | ||| || || ||| || |||||||||||||||||
Sbjct 14597 ACTATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGT 14539
Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375
|| || || ||||| || || ||| ||| || |||||| | | |||
Sbjct 14538 CCCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTAC 14479
Query 112376 GATCAA---GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432
||||| ||| ||||||||||| |||||| |||| | | | |||||
Sbjct 14478 CATCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGT 14422
Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-A 112491
||||| ||||| || || || | ||||| || | || || || | || |
Sbjct 14421 TGCTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGA-CCTGGAACGTCGCG 14363
Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551
| ||| | |||| || ||||| |||| || ||| ||||| ||||| ||| |
Sbjct 14362 TCTATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTG 14303
Query 112552 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 112608
| || | || | || || || |||| || || || || || ||| | || |
Sbjct 14302 TAATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATC 14246
Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668
| || ||||||| |||||||| ||||| || || | ||||| |||| | |
Sbjct 14245 GGCCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGT 14186
Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728
| || |||| || || | |||| ||||| | || || ||||| || || ||||| |
Sbjct 14185 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGG 14126
Query 112729 CTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788
| ||||||||| | || | || |||| |||| | |||||| | | || ||||
Sbjct 14125 CGCTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTT 14066
Query 112789 CTCCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGG 112827
|||| | || | ||||| | ||||| | || |||||||
Sbjct 14065 CTCC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 14027
>seq729
Length=118376
Score = 161 bits (178), Expect = 1e-34
Identities = 214/289 (74%), Gaps = 10/289 (3%)
Strand=Plus/Minus
Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 102106
||||| |||| || |||||||| |||| || ||| | | ||||||| || || |
Sbjct 63952 CTCATCGACACCTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 63894
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 102163
|| |||| ||||| | |||||| || || |||||| | ||| | ||| |||
Sbjct 63893 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 63834
Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
|| ||| | || ||||||||| | || ||||| || |||||||||||||||||
Sbjct 63833 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 63777
Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282
|||||| ||| ||| | || | ||||| |||||||||||||||||||| ||||| ||
Sbjct 63776 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCT 63718
Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||| |||||||| |||||||| |||||||| |||||| || |||||
Sbjct 63717 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 63669
>seq335
Length=12122
Score = 102 bits (112), Expect = 1e-16
Identities = 282/427 (66%), Gaps = 4/427 (1%)
Strand=Plus/Minus
Query 175840 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 175899
||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | |
Sbjct 8696 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 8637
Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959
||||| |||||| | |||||| || |||| |||||||| | |||||| ||
Sbjct 8636 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 8577
Query 175960 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018
| ||||| ||| | |||| || || ||||| |||||||| | | || |
Sbjct 8576 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGGGCAGAAGCTG 8518
Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078
| || |||||||| ||||| |||||||| || || || || || |||||||| |
Sbjct 8517 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 8458
Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138
|||| || | | ||| | || || |||||| ||| | | | | ||||||
Sbjct 8457 TGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCAC 8398
Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197
| ||||| || || | ||||| | || | |||| ||| ||| || || || || ||
Sbjct 8397 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 8339
Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257
| |||| || | |||||| | | | |||||| || || ||| ||||||||
Sbjct 8338 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 8279
Query 176258 TCCGCCA 176264
|| ||||
Sbjct 8278 TCGGCCA 8272
Score = 82.4 bits (90), Expect = 9e-11
Identities = 117/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 176921 AGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTT 176980
|||||||| || || || | ||| || || || || | ||||| | ||| ||||| | |
Sbjct 7515 AGAGGGAAAACGCCATACTCATCACGTCCGACAACTGCAAGACCAGAAACGGCGAGAGCT 7456
Query 176981 TTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCC 177037
|| |||||||| || || |||| |||||| || || |||| || || |||| ||
Sbjct 7455 TTGGCAGAATCTCCTTCCGTCAGGATGAGAGTGCAGTTCTTGG-AGTTTCGGCCG--CCA 7399
Query 177038 GCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAATTTTG 177079
|| ||||||||||| || | || |||||||| |||| ||
Sbjct 7398 GCATTGTTCGCATCTTCAAGCTTTACAATACCAGAAATTCTG 7357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620734237237440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |