Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq729 159 8e-34
seq743 98.7 2e-15
seq424 98.7 2e-15
>seq729
Length=118376
Score = 159 bits (176), Expect = 8e-34
Identities = 171/225 (76%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || || || ||||||||||| ||||| ||||||||||||| ||||||
Sbjct 78071 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGT 78012
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| || ||||| || ||||| || ||||| || | ||| || ||||| ||||| || ||
Sbjct 78011 TCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACC 77952
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095
|| |||||||| || || |||||| || || ||||| || ||| ||| |||||
Sbjct 77951 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGA---TTCGACTTC 77895
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||||| || || || || | ||||| ||||| | ||||||
Sbjct 77894 AAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77850
Score = 152 bits (168), Expect = 1e-31
Identities = 155/201 (77%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || || || ||||||||||| ||||||||||||||||||| ||||||
Sbjct 78859 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGT 78800
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| |||||||| || || || || |||||||| |||||||| || || || || || ||
Sbjct 78799 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 78740
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095
|| |||||||| || || ||||||||| || ||||| || ||| ||| |||||
Sbjct 78739 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGA---TTCGACTTC 78683
Query 195096 AAGGGTAACCGTCTTTCCTGT 195116
||| || | ||||| || ||
Sbjct 78682 AAGAGTGATTGTCTTACCCGT 78662
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||||||||| || || || ||||| || ||||| |||| |||||| | ||||| ||
Sbjct 78566 AACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 78507
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || ||||| || || || | |||||| || || |||||||| ||||| ||||| ||
Sbjct 78506 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 78447
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| || || ||||| || || ||||| || || | |||||
Sbjct 78446 AATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTT 78387
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| |||||||| || || || | |||||
Sbjct 78386 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 78357
Score = 138 bits (152), Expect = 3e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019
|| |||| |||| ||||| || |||||||| ||||||||||| || ||||| | |||||
Sbjct 77751 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 77692
Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079
| ||||| ||||| || || || ||||| || || || |||||| || || |||||||
Sbjct 77691 GCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 77632
Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139
| ||| ||||||||||| || | ||||| || || | ||| || ||||| | |||||
Sbjct 77631 CGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCA 77572
Query 195140 T 195140
|
Sbjct 77571 T 77571
Score = 127 bits (140), Expect = 5e-24
Identities = 135/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
||||||| | | ||||| ||||| || || ||||| || |||||||| | ||||||||
Sbjct 78255 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 78196
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| ||||| || || || ||||| ||||| || |||||| || ||||||||||| |
Sbjct 78195 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 78136
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||| || ||||| || | |||||||| || | ||| || ||||| | |||||
Sbjct 78135 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78078
>seq743
Length=80710
Score = 98.7 bits (108), Expect = 2e-15
Identities = 114/154 (74%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
|||| || | ||| || || || || ||||||||||| || |||||||| | ||| ||||
Sbjct 15216 TGTAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTT 15157
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| || || || || || ||||| || || || |||||| || || |||||||| |
Sbjct 15156 GGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 15097
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || || || ||||| | |||||||| ||
Sbjct 15096 AGGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 15063
>seq424
Length=150651
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||||||||| |||||| |||||||||||||||||| | || || | |||||||||
Sbjct 14761 TTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATT 14702
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| ||| | |||||| || |||||||||| || ||||| ||| || || |
Sbjct 14701 GGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTG 14642
Query 160707 AGACTCTTTATGAAAGATACGA 160728
| | |||||||| || |||||
Sbjct 14641 AAAAGCTTTATGAGAGCTACGA 14620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109466645574884
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |