Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq729 96.9 2e-15
>seq729
Length=118376
Score = 96.9 bits (106), Expect = 2e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| | ||||| || ||| || || ||||| ||||| ||||| | || |||| ||
Sbjct 78566 AACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 78507
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| ||||| || ||||| || | ||||||||| || | || | || ||||||||
Sbjct 78506 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 78447
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||||| || ||| | || | ||| | ||| || |||| || || || ||
Sbjct 78446 AATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTT 78387
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||| || | |||||| |||||||||||||||
Sbjct 78386 TCCGGTCAAAGTCTTGACAAAGATCTGCATA 78356
Score = 84.2 bits (92), Expect = 1e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 34819 TTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCC 34878
|||| |||| ||||| || |||||||| || || | |||||| ||||| | || | |
Sbjct 78240 TTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATAC 78181
Query 34879 CCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGA 34938
|||||||||| ||||||| ||||| | || | ||| || ||||| || |
Sbjct 78180 CCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAA 78121
Query 34939 CGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || ||||| || |||||||| || || |||||||||
Sbjct 78120 GAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCATA 78077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324629437791456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |