Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq373 125 5e-23
seq729 116 2e-20
seq493 87.8 1e-11
>seq373
Length=10870
Score = 125 bits (138), Expect = 5e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460
||||| || || || ||| |||||||||||||||||||| |||| | ||| ||||||
Sbjct 10428 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 10487
Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520
||||| || ||||| || || | |||| |||| |||||| || ||| |||| |||
Sbjct 10488 CTTATCGGTGATGCCGCGAAGAACCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 10547
Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580
||||| | ||||| || ||||| ||| | ||| || || || | || ||| |||
Sbjct 10548 GCTAAGCGGTTGATCGGCCGTAAATTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 10607
Query 474581 TGGCCTTTTAAGGTGAT 474597
|||||||| ||||| ||
Sbjct 10608 TGGCCTTTCAAGGTAAT 10624
>seq729
Length=118376
Score = 116 bits (128), Expect = 2e-20
Identities = 132/177 (75%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652
||| ||||| | ||||||| | ||||||||||||||||| || ||||| | || ||
Sbjct 78029 ATTGTAATCGGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTG 77970
Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
|| |||||||| || || ||||||||||| ||||| |||||| || || |||||
Sbjct 77969 CTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC 77910
Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | |||||||||||| ||||| |||||||| || || ||||| |||||
Sbjct 77909 GCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 77853
Score = 114 bits (126), Expect = 8e-20
Identities = 126/165 (76%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||| ||| ||||||||| ||||| |||||||| || | ||||| || ||||||||
Sbjct 77737 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 77678
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGT 480724
|| || |||||||| || ||||| |||||| || || || || | | | | |
Sbjct 77677 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 77618
Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| |||| || ||||| ||||||||||||||||| |||||||||||
Sbjct 77617 T-CAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTG 77574
Score = 114 bits (126), Expect = 8e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656
||||||| | ||||| ||| || ||||||||||| || || || | ||||||||
Sbjct 78253 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78194
Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716
|||||||| || || |||||||| |||||||| |||||| ||||| || |||| |
Sbjct 78193 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78134
Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | ||||| || ||||| || ||||| |||||||| |||||||| ||
Sbjct 78133 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 78081
Score = 111 bits (122), Expect = 1e-18
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||| ||||| ||| ||| || | || || || | |||||
Sbjct 78578 ACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGT 78519
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| |||||||| || ||||||||||| | ||||| |||||||||||||| ||
Sbjct 78518 ACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 78459
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||| |||||||| || || || ||||| |||| | | | ||| |
Sbjct 78458 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGA-CTTCGA 78400
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||| || ||||| | |||||| || || || ||
Sbjct 78399 GAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 78360
Score = 93.3 bits (102), Expect = 3e-13
Identities = 106/139 (76%), Gaps = 4/139 (3%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609
|| ||||| | || ||||| || || ||| |||| ||| ||| ||||| | ||||
Sbjct 78858 CGGAGACGCAAGACGAGATGGAGAGTGGACTC-CTTTTGAAT-ATTGTAATCGGAAAGAG 78801
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
||| | |||||||||||| ||||| || || || || ||||| |||||||| || || |
Sbjct 78800 TTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATAC 78741
Query 480670 CTTCCTTGTCTTGAATCTT 480688
| ||||||||||| |||||
Sbjct 78740 CCTCCTTGTCTTGGATCTT 78722
>seq493
Length=359387
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746
|||||| |||||||||||||| | || || | || || | ||| || ||| ||||
Sbjct 323921 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 323980
Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806
||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || |
Sbjct 323981 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 324040
Query 318807 CATAACTTGGAAAAAGAATTC 318827
|||| | ||||| |||||||
Sbjct 324041 CATAGCGTGGAACCAGAATTC 324061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268134074615696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |