Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq335 122 3e-22 seq424 107 6e-18 seq729 102 2e-16 seq493 93.3 1e-13 >seq335 Length=12122 Score = 122 bits (134), Expect = 3e-22 Identities = 261/384 (68%), Gaps = 12/384 (3%) Strand=Plus/Minus Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048 ||||||||| ||||| | || |||||||| | | ||| || | | || || |||| Sbjct 8696 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 8637 Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106 | |||| |||| | |||||| || ||||| ||| | |||| ||||| | Sbjct 8636 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 8582 Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162 | || || || || ||||| ||| |||| || |||||| ||||| | | || Sbjct 8581 GCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGGGCAGA 8523 Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222 |||||||| || ||||| |||||| || |||||||| ||||| || | | ||||| Sbjct 8522 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 8463 Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282 ||||||||| ||| ||||| ||||| || | || ||||| | | | |||||||| Sbjct 8462 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGC 8403 Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342 |||||| || |||||| | | | || ||||| || || | || ||||| || || Sbjct 8402 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 8343 Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366 ||| | ||| ||| |||||| Sbjct 8342 TTCTTTGGTGAGGTTTCGCTTGAA 8319 >seq424 Length=150651 Score = 107 bits (118), Expect = 6e-18 Identities = 422/661 (64%), Gaps = 7/661 (1%) Strand=Plus/Plus Query 155664 TTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATG 155723 |||||||| || | | ||| ||||| || || ||| |||||||||||| ||| Sbjct 14473 TTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATG 14532 Query 155724 TATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTA 155783 || ||| || ||||| | || || || || || | ||| || | |||| || Sbjct 14533 TAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCTTCTGGGCTTTG 14592 Query 155784 ATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCA 155843 || || | |||| | | ||| || || ||| ||| || | || ||| Sbjct 14593 ATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCA 14652 Query 155844 CCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTA 155903 |||||| || ||||||||||||| |||| || | || | |||| || Sbjct 14653 CCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT-- 14710 Query 155904 CCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTG 155961 | |||| ||||||| ||| || | ||| ||| | || |||||||| || | | Sbjct 14711 CGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAG 14770 Query 155962 CCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGAT 156021 | | |||||| | || || ||||||| || || | ||| || | ||||| | Sbjct 14771 CTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGT 14830 Query 156022 GGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACAT 156078 | ||||| ||||| || || || |||| | |||| ||||| ||||| || | Sbjct 14831 GCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCAACGT 14890 Query 156079 ACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGG 156138 | ||||| || | | | | | ||||||||||| || || ||||| ||||||| Sbjct 14891 ATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGG 14950 Query 156139 TTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198 | ||| ||| | || || | || | ||| ||||| || || ||||||||||| | Sbjct 14951 TACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGG 15010 Query 156199 ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT 156258 || || || ||||| || ||| | ||||| | | ||||| ||||| || |||| Sbjct 15011 CAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCAT 15070 Query 156259 CTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318 | | ||| | | || |||| || | ||| ||||| || || || |||||||| | Sbjct 15071 CCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAA 15130 Query 156319 G 156319 | Sbjct 15131 G 15131 >seq729 Length=118376 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||||||||| |||||| | ||||||||| || ||||||| ||| | | Sbjct 63888 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 63829 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||| | || ||| |||||||||||| || ||||| || || ||| |||| | | Sbjct 63828 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 63769 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || || |||||||| ||||| ||| | | ||||| || || ||||||| Sbjct 63768 TCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACG 63709 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || || || | ||||||| || |||||||| |||||| Sbjct 63708 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 63668 >seq493 Length=359387 Score = 93.3 bits (102), Expect = 1e-13 Identities = 200/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596 ||||||| || || ||||||| ||| | | | ||| ||||| |||| || | | Sbjct 323920 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 323979 Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656 || ||||||||||| || || || ||||| |||||||| | ||| | ||||||| Sbjct 323980 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 324039 Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714 ||||||| ||||| | | |||| | ||| | || | ||| | | ||| | ||||| Sbjct 324040 CCATAGCGTGGAACCAGAATTCTTGTGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 324097 Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT- 302770 |||||| || | |||||| || | ||||| ||| | |||||||| | | || || Sbjct 324098 GAAACCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 324154 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || | | ||| | | |||||| ||||| |||||| ||| || |||| Sbjct 324155 TCGGA-ATCCGAACGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 324201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471797761738524