Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq424 168 8e-37 seq335 143 3e-29 seq729 114 2e-20 >seq424 Length=150651 Score = 168 bits (186), Expect = 8e-37 Identities = 716/1122 (64%), Gaps = 37/1122 (3%) Strand=Plus/Plus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||||||||| ||||||| | || | || ||||||||| || | | |||||||| Sbjct 14027 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 14086 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 ||| | || || | ||| || |||||| || | ||||| || || || || | Sbjct 14087 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 14146 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042 |||| | ||| | ||| | || ||| | || || || |||| || | || | Sbjct 14147 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14206 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || | || || ||||| || ||||| | ||||| ||| | || ||||| || || Sbjct 14207 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA 14261 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || |||| || ||||| | || | | || || || || || || Sbjct 14262 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 14318 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||||||| ||| || || || || || |||| | ||| | |||| || | Sbjct 14319 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTC 14378 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || | ||||| || | || || | ||| || ||||| ||||| | | Sbjct 14379 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 14438 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 111336 ||||| | ||||| ||||| | ||| ||| || || || || | | |||||| Sbjct 14439 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 14495 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||| |||||||||||| ||||| || || ||||| || || Sbjct 14496 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 14555 Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 111453 | | ||| || || ||||| | || | |||| | | | | || ||| | || Sbjct 14556 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 14612 Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513 || | |||||| | || || |||||| || ||||| |||||| || || Sbjct 14613 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCC 14672 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || || | | ||||| | ||||| ||| | ||| | || || ||||||||||| Sbjct 14673 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 14732 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 ||| || | ||||| |||| | || ||||| | | || |||| || | ||| || Sbjct 14733 AAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 14792 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| || Sbjct 14793 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 14852 Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 || | || ||||| ||| |||||| || || || |||||||||| | Sbjct 14853 GAAGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTA 14909 Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807 | || ||||| ||||| || || | || | |||||| || || ||| || Sbjct 14910 AGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 14969 Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867 || || | | || || ||||| | |||||||| || || ||| ||||| || || Sbjct 14970 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 15029 Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927 ||| | | ||||| | |||||||| | || ||||| ||||| |||| | ||||| Sbjct 15030 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 15089 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 ||| ||||| || |||| || ||||| || ||||| || Sbjct 15090 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15131 >seq335 Length=12122 Score = 143 bits (158), Expect = 3e-29 Identities = 296/432 (69%), Gaps = 14/432 (3%) Strand=Plus/Minus Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684 ||| ||||||||||| || | ||||| | | |||||||| | || |||||| || | Sbjct 8696 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 8637 Query 181685 GTCTGGTTCAATGGAGCGT-CCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 |||||||||||| || | ||||| ||| ||||||||||||| | | |||||| || Sbjct 8636 ATCTGGTTCAATGC-GCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 8578 Query 181744 GATCAAAGATCTTGCGAGCC-TCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAA 181802 | | ||||| |||| | ||| ||| ||| |||||||||||||| | | || Sbjct 8577 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCT 8519 Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862 |||||||||||||| ||||| ||||||||||| || || || || || || ||| Sbjct 8518 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 8459 Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACA----C 181918 ||||| || ||| | || || || ||||| | ||| | | | Sbjct 8458 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGGC 8403 Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCA 181977 |||||| ||||| || || | || |||| ||| || |||| ||| ||| || ||||| | Sbjct 8402 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGA 8344 Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037 |||| | ||||||| | ||| ||| || | | || || | ||| ||| |||| Sbjct 8343 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 8284 Query 182038 GACCATCCGCCA 182049 |||| || |||| Sbjct 8283 GACCGTCGGCCA 8272 >seq729 Length=118376 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||| ||||| || || || || || |||||| ||||| Sbjct 63668 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63727 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||||||||| |||||||| | ||| | || | ||| ||| || || |||||||||| Sbjct 63728 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 63786 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 |||||||||| ||||| |||| || || ||| |||| Sbjct 63787 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 63826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023741379200