Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq729 181 3e-40 seq65 104 7e-17 seq785 91.5 4e-13 >seq729 Length=118376 Score = 181 bits (200), Expect = 3e-40 Identities = 181/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| ||||| ||||| || ||||| || || | Sbjct 78591 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 78532 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||||||||| |||||||| || | |||||||||| Sbjct 78531 AGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 78472 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| ||||| || |||||||| || || || || || || || | ||||| | Sbjct 78471 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 78412 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || | ||||||||||| | || || ||||| |||||||| Sbjct 78411 ACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78357 Score = 152 bits (168), Expect = 2e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564 ||||||||||| || | | | || ||||| ||||| ||||| ||||||||||| ||| Sbjct 78870 TACATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAA 78811 Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624 || || | ||||| |||||||||||||||||||| || ||||| || |||||||||||| Sbjct 78810 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 78751 Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 || || || || || || || || || || || || || || || || | ||| | | Sbjct 78750 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT 78691 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || |||||||| || | |||||| || || || Sbjct 78690 TCGACTTCAAGAGTGATTGTCTTACCCGTAAG 78659 Score = 147 bits (162), Expect = 7e-30 Identities = 138/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 |||||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||| || Sbjct 78253 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78194 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 |||||||| || || || || |||||||| || || || ||||| ||||| | ||||| Sbjct 78193 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78134 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| ||||| || | ||||||||||| || || || || ||||||||||| Sbjct 78133 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78078 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | | || ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 78080 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATC 78021 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||||||||| ||||| || || || | || ||||| ||||| Sbjct 78020 GGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGG 77961 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || || || || || || || ||||| || || | ||| | ||| Sbjct 77960 AGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTC 77901 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| |||| || || ||||| || ||||| || || || ||||| Sbjct 77900 GACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77850 Score = 114 bits (126), Expect = 4e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 ||||||||||| || || ||||||||||| | |||||||| |||||||| || || || Sbjct 77728 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 77669 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || ||||| || || || || ||||| || || | || || | || |||||||| || Sbjct 77668 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 77609 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || || || || ||||| ||||| Sbjct 77608 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77571 >seq65 Length=248 Score = 104 bits (114), Expect = 7e-17 Identities = 170/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || || || ||||| |||||| || | |||| || | || || || || || Sbjct 245 GCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAGCCT 186 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 ||||| || || || || || || ||||| || | | ||| || || || || | Sbjct 185 ACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGTGAGAAGAACGTTTTG 126 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 || || || | |||||||||||||| ||||| || || | || |||| ||||| || Sbjct 125 ATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGAGGAGGGTATC 66 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 || || || || || || |||||||| || || |||||||| || || ||||| || || Sbjct 65 TTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAACCGA 6 Query 349895 CTCGT 349899 || || Sbjct 5 CTTGT 1 >seq785 Length=34106 Score = 91.5 bits (100), Expect = 4e-13 Identities = 184/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || | |||||| || || || || || || |||||| Sbjct 19103 GTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCC 19044 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | | || || | || || || ||||| |||||||| || ||||| || || ||| Sbjct 19043 GGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 18984 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || | | || || | || ||| | || || || || || |||||||||||||| Sbjct 18983 GACGAGAAGACCGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 18924 Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 ||||| || || || || || | | | || | || || || || |||||||||| Sbjct 18923 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 18866 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890 | || ||||||||||| || || || || || Sbjct 18865 ACACTCATCTTGGTGGTGAGGACTTCGACAA 18835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515233976264756