Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq729 181 3e-40
seq65 104 7e-17
seq785 91.5 4e-13
>seq729
Length=118376
Score = 181 bits (200), Expect = 3e-40
Identities = 181/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | |||||||| ||||| ||||| || ||||| || || |
Sbjct 78591 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 78532
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||||||||| |||||||| || | ||||||||||
Sbjct 78531 AGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 78472
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||||||||| ||||| || |||||||| || || || || || || || | ||||| |
Sbjct 78471 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 78412
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || || | ||||||||||| | || || ||||| ||||||||
Sbjct 78411 ACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78357
Score = 152 bits (168), Expect = 2e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564
||||||||||| || | | | || ||||| ||||| ||||| ||||||||||| |||
Sbjct 78870 TACATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAA 78811
Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624
|| || | ||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 78810 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 78751
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
|| || || || || || || || || || || || || || || || | ||| | |
Sbjct 78750 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT 78691
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716
|| |||||||| || | |||||| || || ||
Sbjct 78690 TCGACTTCAAGAGTGATTGTCTTACCCGTAAG 78659
Score = 147 bits (162), Expect = 7e-30
Identities = 138/176 (78%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|||||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||| ||
Sbjct 78253 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78194
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
|||||||| || || || || |||||||| || || || ||||| ||||| | |||||
Sbjct 78193 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78134
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| |||||| ||||| || | ||||||||||| || || || || |||||||||||
Sbjct 78133 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78078
Score = 141 bits (156), Expect = 3e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | | || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct 78080 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATC 78021
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| || ||||||||||| ||||| || || || | || ||||| |||||
Sbjct 78020 GGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGG 77961
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || || || || || || || ||||| || || | ||| | |||
Sbjct 77960 AGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTC 77901
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||||| |||| || || ||||| || ||||| || || || |||||
Sbjct 77900 GACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77850
Score = 114 bits (126), Expect = 4e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639
||||||||||| || || ||||||||||| | |||||||| |||||||| || || ||
Sbjct 77728 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 77669
Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699
|| ||||| || || || || ||||| || || | || || | || |||||||| ||
Sbjct 77668 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 77609
Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| ||||| || || || || ||||| |||||
Sbjct 77608 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77571
>seq65
Length=248
Score = 104 bits (114), Expect = 7e-17
Identities = 170/245 (69%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714
|| || || || ||||| |||||| || | |||| || | || || || || ||
Sbjct 245 GCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAGCCT 186
Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774
||||| || || || || || || ||||| || | | ||| || || || || |
Sbjct 185 ACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGTGAGAAGAACGTTTTG 126
Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834
|| || || | |||||||||||||| ||||| || || | || |||| ||||| ||
Sbjct 125 ATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGAGGAGGGTATC 66
Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894
|| || || || || || |||||||| || || |||||||| || || ||||| || ||
Sbjct 65 TTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAACCGA 6
Query 349895 CTCGT 349899
|| ||
Sbjct 5 CTTGT 1
>seq785
Length=34106
Score = 91.5 bits (100), Expect = 4e-13
Identities = 184/271 (68%), Gaps = 4/271 (1%)
Strand=Plus/Minus
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || ||||| || || || | |||||| || || || || || || ||||||
Sbjct 19103 GTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCC 19044
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | | || || | || || || ||||| |||||||| || ||||| || || |||
Sbjct 19043 GGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 18984
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
|| | | || || | || ||| | || || || || || ||||||||||||||
Sbjct 18983 GACGAGAAGACCGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 18924
Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
||||| || || || || || | | | || | || || || || ||||||||||
Sbjct 18923 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 18866
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| || ||||||||||| || || || || ||
Sbjct 18865 ACACTCATCTTGGTGGTGAGGACTTCGACAA 18835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515233976264756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |