Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 55.1_202017-04-19] 1,052 sequences; 18,405,114 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq424 228 9e-55 seq729 113 5e-20 seq707 82.4 8e-11 >seq424 Length=150651 Score = 228 bits (252), Expect = 9e-55 Identities = 801/1237 (65%), Gaps = 34/1237 (3%) Strand=Plus/Minus Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 ||||||||||||||||| | || || ||||| || ||||| ||||| |||||| Sbjct 15131 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 15072 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336 |||||| |||||| || |||||||| || |||||| || || || ||||||||| Sbjct 15071 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 15012 Query 19337 TCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395 |||| ||||| || | ||| | | | |||||||| ||| || | || || Sbjct 15011 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 14953 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || || || || |||| ||| | || |||||||| | | | || ||| || | Sbjct 14952 TACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 14893 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 ||||| | || || || ||| || || | ||||||||||| || ||||| || Sbjct 14892 ATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 14833 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||||| || || | || ||| | || | | |||||| ||| | |||||| | || Sbjct 14832 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 14773 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 ||| || || ||| ||| | ||||| | || || |||||| || || || Sbjct 14772 AGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATC 14713 Query 19636 GGACGAAGAATGGCACCTGATGTG-CCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || | || ||| || ||||| ||||| ||| |||||||| || ||||||| |||| Sbjct 14712 CGATGGGGATTGGACTCTTATGTGTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACG 14654 Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGG 19754 | || | || | || | || || |||| |||||| | | ||| Sbjct 14653 GTGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTA 14594 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 || |||| | | | ||| | | ||||| | || |||||| || || | Sbjct 14593 TCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTT 14534 Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 |||| ||||||||||| || || ||| ||||||| || || ||| || | || | |||| Sbjct 14533 ACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCA 14474 Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934 | || ||||| |||||||||||||||||| ||| || || || ||| || | Sbjct 14473 AATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCT 14414 Query 19935 GTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCAAGGCCT----CCTC----CTTCG 19985 ||||||| || || || ||| || || | ||||| || ||| | || || | Sbjct 14413 GTAATCTTGCTTCTCT-TGCTCTTCCTGCCTTCGT--AGACCTGGAACGTCGCGTCTATG 14357 Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 |||| || || ||||| | ||| ||| || || || || | || ||| Sbjct 14356 ACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATCA 14297 Query 20046 ATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGA 20102 || |||| || || | | || ||| ||||| || || |||||||| ||||| Sbjct 14296 CCCGTAACTACTATCCAGTGCCTGA---GGCCCGCAACTCCAACATGCGCCATCGGCCTG 14240 Query 20103 TCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACG 20162 | | | || |||||||| || ||||||| ||||||| || || | | |||||| Sbjct 14239 TTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTCGACT 14180 Query 20163 ATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCC 20222 | |||| | || ||||| | ||||||||| | | ||||||||||| || Sbjct 14179 CCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCGCTTG 14120 Query 20223 TGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282 || || |||||||| ||| | ||| || | || || | | | | || || ||| Sbjct 14119 AGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCTCCCA 14060 Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGGG-CGT-----CACTGAGAATGAGTTTT 20336 || |||||||||| ||| ||||||||||| ||| ||| || | | | Sbjct 14059 TCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTTTGGGACT 14000 Query 20337 GGAGCGCCCTCAAGGTTGAGATC---AAGACCCACGGGCTTCGCAACTCGTTGCTCGTCG 20393 ||| | || |||| ||||| ||| |||| | | ||||| |||||||||| Sbjct 13999 GGACAGAGCTGAAGGCCAAGATCGCACAGA---ACGGTGTGAGGAACTCTTTGCTCGTCG 13943 Query 20394 CGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430 | || ||||| || ||||| || | || ||| |||| Sbjct 13942 CCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGG 13906 Score = 206 bits (228), Expect = 3e-48 Identities = 792/1232 (64%), Gaps = 24/1232 (2%) Strand=Plus/Plus Query 78574 CCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGA 78633 |||| ||| || | || ||||| || ||||| || ||||| || | ||| |||| | | Sbjct 13906 CCCAAGATTTGAGACGTTGAGGCAGTAGGCATAGGGGCGACGAGCAAAGAGTTCCTCACA 13965 Query 78634 CCATGCGTCTTGATCTCGACCTTTAGGCC------GTCCCAAAATTCATTCGCCGCGATC 78687 || | | ||||| | |||| || | |||||||| || | | | Sbjct 13966 CCGTTCTGTGCGATCTTGGCCTTCAGCTCTGTCCAGTCCCAAAGGTCGGTGGGAACACGG 14025 Query 78688 CCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAA 78747 ||||||||||| ||||||||||||| || || || || | | | | || || Sbjct 14026 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 14085 Query 78748 GATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCG 78807 | || ||||| ||| |||||||||||| | || ||||||||||| | | |||| Sbjct 14086 GTACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCG 14145 Query 78808 AAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATG 78867 ||||| | ||||| || | |||| | |||||||| | || || |||| Sbjct 14146 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 14205 Query 78868 AAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTT 78927 || | ||||| || |||||||| || | | | | || || |||||||||||| || Sbjct 14206 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTG 14265 Query 78928 CGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTG 78984 |||||| || | | || || |||| || ||| || || ||||| || Sbjct 14266 CGGGCC---TCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTA 14322 Query 78985 ACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GAT-TTCCT--TTGATG 79038 || ||| || | ||||| || || ||| ||| | || |||| | | | Sbjct 14323 ACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTACG 14382 Query 79039 AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC 79097 || | || || ||| || || || || || || || || || || || |||| Sbjct 14383 AAGGCAGGAAGAGCA-AGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 14441 Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| |||||||| || || | ||| || |||||||| || | || ||| |||||| Sbjct 14442 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14501 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 ||| ||| || ||||||||||| ||||| || || ||||| ||| || Sbjct 14502 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 14561 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGAC 79277 ||| | | || ||| | | | |||| || | ||| | | ||||| | Sbjct 14562 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 14621 Query 79278 GTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTC 79337 ||| || || | || | || | || || || || |||| || || |||||||| Sbjct 14622 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 14681 Query 79338 GTGCGGG-CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396 | ||||| ||||| || ||| ||| | || || || || |||||| || || | Sbjct 14682 G-GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 14740 Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456 |||||| ||||| ||| || || || || | |||||| | || |||||| | Sbjct 14741 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 14800 Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516 | || | ||||| | | || |||||||| ||||| |||||||||||||| | || Sbjct 14801 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 14860 Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576 | |||||| || || || | ||||| || || ||| || | || ||||||||| Sbjct 14861 CAGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCA 14920 Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636 | || | |||||||| || | || || || ||| || | || |||| || | Sbjct 14921 TAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGA 14980 Query 79637 TGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695 | || | | | ||| | || || || |||| ||||||||| || || || |||| Sbjct 14981 TATT-GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTG 15039 Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGAC 79755 || || |||||||| || || || ||||| |||||||| || || |||||||| ||| Sbjct 15040 AGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGAC 15099 Query 79756 ATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 || || || | |||||||||||||| || Sbjct 15100 ATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15131 >seq729 Length=118376 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||||| |||||||| |||||| || |||||||||||||| || ||| | || Sbjct 63817 CGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATC 63758 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 |||||||| || ||||| || |||||||| || || | ||||| |||||||| || || Sbjct 63757 TTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCT 63698 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||| ||||| Sbjct 63697 CGAGACGAGGGTCTCCA 63681 >seq707 Length=266349 Score = 82.4 bits (90), Expect = 8e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||||||||||||||| || ||||| ||||| || || ||| || |||||| | Sbjct 36961 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 36902 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || | ||||| || |||| || || |||||| |||| |||| ||| Sbjct 36901 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCGAACGAGTTGATCAGTAGGGATGAG 36842 Query 60111 GGCCTCCAT-CAG-GAGTT 60127 || | ||| ||| ||||| Sbjct 36841 GGGATGCATACAGTGAGTT 36823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517586898880