Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq900 158 2e-33 seq923 96.9 5e-15 seq259 84.2 3e-11 >seq900 Length=79834 Score = 158 bits (174), Expect = 2e-33 Identities = 233/329 (71%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315 |||||| | ||| | || | |||||| || || |||| |||||| || | | Sbjct 63954 GAGAACATCCACGCCGAGACCTACTCTCTCCTCATCGACACCTACATTAAGGACACTGCT 63895 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | ||| || | | |||||| |||| || ||||| | || | ||| || || ||||| Sbjct 63894 CGACGAAA---CTTCCTCTTTGACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCC 63838 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| |||| |||||| |||| | || |||| | || ||| |||| | || Sbjct 63837 GACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCT 63778 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || ||||| ||||| |||||||| || ||| ||| ||| ||||||| ||||| ||| Sbjct 63777 TTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAG 63718 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||||| || || || | ||||||| | || |||||||||||||| Sbjct 63717 AAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGT 63658 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT 125584 || ||| ||||||||| ||| || || Sbjct 63657 CTCCACACCGACTTTGCCTGTCTCCTCTT 63629 >seq923 Length=40707 Score = 96.9 bits (106), Expect = 5e-15 Identities = 221/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 69884 GACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAG 69943 ||||||| ||| ||||| |||||||||| ||||| | |||||||| | ||| Sbjct 4152 GACAACACCCTTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAG 4093 Query 69944 CTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACAC 70003 || |||||| | |||| || | ||| | ||||| | ||| | |||| ||| Sbjct 4092 CTTTTGTGGTTCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGG 4033 Query 70004 ATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACA 70062 || ||| || ||| | || | ||| || |||| | |||| || | |||||| Sbjct 4032 ATCTGGGATGGTAACGGAAG-CAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCACAGACG 3974 Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122 || || |||||||| || |||||||| ||||||||||| || | || || |||| Sbjct 3973 GGAAGGTGATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACAC 3914 Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 || ||| |||||| || | || || || ||| |||| | | || ||||| Sbjct 3913 TGATGCCGACGGCGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACAC 3854 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGAT 70212 |||||| ||||||||| || ||| |||| Sbjct 3853 CATCAAGAACAATCCAACTGACAGGCGGAT 3824 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360 ||| | || ||| | ||||||||||| | ||| | ||||||||||| || || ||| Sbjct 3658 AAACTTTCTTGCCTGATGTATCAGAGATCTTGTGACTTAGGCCTCGGTGTCCCATTCAAC 3599 Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC-CTGAAAGCGCA 70419 ||||| || | |||| || || |||||||| | |||||||| | ||| || | || Sbjct 3598 ATTGCGTCTTACGCATTGTTAACCCATATGATTGCCCTCATTACCGACACTG-AACCACA 3540 Query 70420 CGAGTTCGTAC-ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 ||||| | | ||| || || || || || ||||| | |||| | || ||||| | Sbjct 3539 TGAGTTTATCCTACA-GATGGGAGATGCGCATGTGTACAGAGATCATGTTGAACCATTGA 3481 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 || |||| | ||| ||||||| ||| ||| |||||| || Sbjct 3480 AGACGCAATTGGAAAGGGAGCCTAGAAATTTCCCCAAGTTG 3440 >seq259 Length=98840 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||||||| || || || || || || || || || | ||| |||| | || ||| Sbjct 83829 CGATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 83888 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || |||||||| || || | | || ||| ||| || |||| | Sbjct 83889 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 83948 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 ||||| | || | || || || |||||| | | ||| | ||||||||||| ||| | Sbjct 83949 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 84008 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| | |||| || ||||| |||| | || || || || |||| | Sbjct 84009 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 84068 Query 97104 GGCGAAGAGTTTGA 97117 || ||||| ||||| Sbjct 84069 GGTGAAGAATTTGA 84082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741048602853440