Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq900 158 2e-33
seq923 96.9 5e-15
seq259 84.2 3e-11
>seq900
Length=79834
Score = 158 bits (174), Expect = 2e-33
Identities = 233/329 (71%), Gaps = 6/329 (2%)
Strand=Plus/Minus
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315
|||||| | ||| | || | |||||| || || |||| |||||| || | |
Sbjct 63954 GAGAACATCCACGCCGAGACCTACTCTCTCCTCATCGACACCTACATTAAGGACACTGCT 63895
Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375
| ||| || | | |||||| |||| || ||||| | || | ||| || || |||||
Sbjct 63894 CGACGAAA---CTTCCTCTTTGACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCC 63838
Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435
| |||| |||| |||||| |||| | || |||| | || ||| |||| | ||
Sbjct 63837 GACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCT 63778
Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495
|| || ||||| ||||| |||||||| || ||| ||| ||| ||||||| ||||| |||
Sbjct 63777 TTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAG 63718
Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555
||||| || |||||||| || || || | ||||||| | || ||||||||||||||
Sbjct 63717 AAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGT 63658
Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT 125584
|| ||| ||||||||| ||| || ||
Sbjct 63657 CTCCACACCGACTTTGCCTGTCTCCTCTT 63629
>seq923
Length=40707
Score = 96.9 bits (106), Expect = 5e-15
Identities = 221/330 (67%), Gaps = 2/330 (1%)
Strand=Plus/Minus
Query 69884 GACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAG 69943
||||||| ||| ||||| |||||||||| ||||| | |||||||| | |||
Sbjct 4152 GACAACACCCTTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAG 4093
Query 69944 CTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACAC 70003
|| |||||| | |||| || | ||| | ||||| | ||| | |||| |||
Sbjct 4092 CTTTTGTGGTTCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGG 4033
Query 70004 ATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACA 70062
|| ||| || ||| | || | ||| || |||| | |||| || | ||||||
Sbjct 4032 ATCTGGGATGGTAACGGAAG-CAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCACAGACG 3974
Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122
|| || |||||||| || |||||||| ||||||||||| || | || || ||||
Sbjct 3973 GGAAGGTGATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACAC 3914
Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182
|| ||| |||||| || | || || || ||| |||| | | || |||||
Sbjct 3913 TGATGCCGACGGCGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACAC 3854
Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGAT 70212
|||||| ||||||||| || ||| ||||
Sbjct 3853 CATCAAGAACAATCCAACTGACAGGCGGAT 3824
Score = 91.5 bits (100), Expect = 2e-13
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360
||| | || ||| | ||||||||||| | ||| | ||||||||||| || || |||
Sbjct 3658 AAACTTTCTTGCCTGATGTATCAGAGATCTTGTGACTTAGGCCTCGGTGTCCCATTCAAC 3599
Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC-CTGAAAGCGCA 70419
||||| || | |||| || || |||||||| | |||||||| | ||| || | ||
Sbjct 3598 ATTGCGTCTTACGCATTGTTAACCCATATGATTGCCCTCATTACCGACACTG-AACCACA 3540
Query 70420 CGAGTTCGTAC-ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478
||||| | | ||| || || || || || ||||| | |||| | || ||||| |
Sbjct 3539 TGAGTTTATCCTACA-GATGGGAGATGCGCATGTGTACAGAGATCATGTTGAACCATTGA 3481
Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519
|| |||| | ||| ||||||| ||| ||| |||||| ||
Sbjct 3480 AGACGCAATTGGAAAGGGAGCCTAGAAATTTCCCCAAGTTG 3440
>seq259
Length=98840
Score = 84.2 bits (92), Expect = 3e-11
Identities = 171/254 (67%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
||||||||| || || || || || || || || || | ||| |||| | || |||
Sbjct 83829 CGATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 83888
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || |||||||| || || | | || ||| ||| || |||| |
Sbjct 83889 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 83948
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
||||| | || | || || || |||||| | | ||| | ||||||||||| ||| |
Sbjct 83949 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 84008
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
|| ||| | |||| || ||||| |||| | || || || || |||| |
Sbjct 84009 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 84068
Query 97104 GGCGAAGAGTTTGA 97117
|| ||||| |||||
Sbjct 84069 GGTGAAGAATTTGA 84082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741048602853440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |