Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq900 127 5e-24
seq247 100 7e-16
>seq900
Length=79834
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || |||||||| || || || ||||||| || |||||
Sbjct 78818 ACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTCA 78759
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||||||||| || || || || | || |||||||| || || || || || || ||
Sbjct 78758 AGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGG 78699
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || ||||| || | ||||||||| | ||| || || || || || ||||||
Sbjct 78698 ATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGATTGTCTTA 78639
Query 104531 CCAGTAAG 104538
|| |||||
Sbjct 78638 CCCGTAAG 78631
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||| || || || || ||||| || ||||| | ||| || || |||||||| |||
Sbjct 78525 GTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCA 78466
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| | | || ||||||||||| || ||||| || ||||||||||| || ||
Sbjct 78465 GCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTA 78406
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || | || || || || || |||||||| || || | ||
Sbjct 78405 ACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTC 78346
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 78345 TTGACAAAGATCTGCAT 78329
Score = 114 bits (126), Expect = 3e-20
Identities = 131/176 (74%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
|| ||||| | ||||| ||| || || ||||| ||||| || || || | | |||||
Sbjct 78225 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78166
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || || || || ||||||||||| || || ||||| || | ||| ||
Sbjct 78165 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78106
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| ||| ||||| || || |||||||| || ||||| || || || || ||||||||
Sbjct 78105 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78050
Score = 105 bits (116), Expect = 2e-17
Identities = 129/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
||||| || ||||| || || ||||| || || || |||||||| || | | || ||
Sbjct 77718 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 77659
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || || || || ||||| ||||| || || ||||| || | ||| ||| |
Sbjct 77658 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 77599
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || || || || || ||||||||||| || || || || || || || |||||
Sbjct 77598 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77543
Score = 84.2 bits (92), Expect = 5e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198
|||||||||| || || || ||||| ||||| || || ||||| || | ||||| |||
Sbjct 63782 TTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGC 63723
Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258
| ||||| |||| || ||||| || | || ||||||||||| | || | ||||
Sbjct 63722 TTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCTCGAGACG 63663
Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284
| ||| | ||| |||||| || |||
Sbjct 63662 AGGGTCTCCACACCGACTTTGCCTGT 63637
>seq247
Length=50369
Score = 100 bits (110), Expect = 7e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
|| |||||||| || ||||| || |||||||| ||||||||||| || ||||| |||
Sbjct 36943 GTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGG 36884
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|| ||||| ||||| | ||||| ||| | || || || ||||| ||||| || |||||
Sbjct 36883 TTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCGAACGAGTTGATCAGTAGGGAT 36824
Query 269258 GAAGG 269262
|| ||
Sbjct 36823 GAGGG 36819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151381523377952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |