Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq480 138 2e-27 seq394 111 3e-19 seq447 93.3 9e-14 >seq480 Length=11289 Score = 138 bits (152), Expect = 2e-27 Identities = 240/349 (69%), Gaps = 0/349 (0%) Strand=Plus/Plus Query 218507 TCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGC 218566 ||||| || | || || || |||||||||| ||||| ||||| | |||| | Sbjct 7426 TCCCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTCTTCTCCATGGCTGATAATATCC 7485 Query 218567 GTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG 218626 | || ||||| |||| || || ||||| || ||||| ||| | ||||||| Sbjct 7486 GATCGATTCCATCTGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTT 7545 Query 218627 CATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686 |||||||| ||||| ||||||| |||||||||||| || | || || || || | Sbjct 7546 GTTTCAAGCGAAACCTCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGG 7605 Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746 | | | | || || || ||||| ||| || ||||||| ||| | |||| Sbjct 7606 AGAAAACCGCATATCACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCAC 7665 Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806 | ||| || |||||||||||||| || ||||| |||||||| || |||||| ||| Sbjct 7666 AAAACTTCGTCGGCAGTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTC 7725 Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855 |||| ||||| || || ||||||||| | |||||||| ||||| Sbjct 7726 GTCTTGCAGGTGGTAAAGACGCAGCTTCTGCCCGTTATATCTTCACAAA 7774 >seq394 Length=185860 Score = 111 bits (122), Expect = 3e-19 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||| ||||| ||| | ||||| |||||||| | || |||| ||||| ||||| || Sbjct 53796 TTGGTCCCAACGGTTCCGGTAAATCTACCCTTGTTAAGCTCCTCACTGGTGAGACTGAGC 53737 Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 ||| ||| | |||| | | |||||||| || ||| || || | ||||||||| || | Sbjct 53736 CCAACCTGGGCGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAAC 53677 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 |||||||||||||||| || |||||||| ||| ||||| Sbjct 53676 ACGCTTTCCACCACATTGACAACCACCTTGACTCTACTCC 53637 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 |||||||| || || || |||||||||||||| || || | || || ||||| | Sbjct 54277 GGTTCTCTTTCTGGCGGCTGGAAGATGAAGCTTGCTCTTGCCCGAGCTATTCTCTTCAAG 54218 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| |||| || ||||| ||||||||| |||| ||||| | |||| Sbjct 54217 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 54158 Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 || | ||| || ||| || | ||| | | ||| ||||||||||||||||||| Sbjct 54157 CTGATCAACTATCTCACCTCCCTTACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 54099 Query 279878 TGGCTTCCT 279886 || |||||| Sbjct 54098 TGACTTCCT 54090 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 280719 GGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGC-AACACCC 280777 |||||||| || || |||||||| || | ||| |||| || ||| |||| || |||| Sbjct 53183 GGTCTTTCCGGTGGTCAGAAGGTTAAGGTCGTCCTCGGTGCCGCTACCTGGCGAAGACCC 53124 Query 280778 TCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 ||| | ||| |||||||||||||||||||||||| ||||| ||| Sbjct 53123 -CACATCATCTGTCTCGACGAGCCTACCAACTATCTCGACCGAGAG 53079 >seq447 Length=185666 Score = 93.3 bits (102), Expect = 9e-14 Identities = 136/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | |||||||| ||||| ||||| |||||||| ||||| |||| || || ||| Sbjct 21004 GGTATCGTCGGACCCAACGGTGCCGGTAAATCTACCCTCATCAAGCTCCTCACCGGTGAG 20945 Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 || | | || || || || || ||||| ||| | || | | ||| ||| Sbjct 20944 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCACCCCGCTCTTCGTGTAGGTTATGTC 20888 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| || |||||||| ||| | | ||| |||||| ||| || || |||||| Sbjct 20887 GCTCAGCATGCGTTCCACCATATCAACCAGCACTTGGACAAAACTGCTGTGCAGTACATT 20828 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 20827 CAGTGGCGATA 20817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027821734482104