Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq537 87.8 1e-11
seq218 86.0 5e-11
>seq537
Length=10869
Score = 87.8 bits (96), Expect = 1e-11
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 518444 ATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTC 518501
|| || || || ||||| | ||||| || | ||||| || || || ||||| | |
Sbjct 10623 ATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAAC--TTCGGCATCGTTAAATTTAC 10566
Query 518502 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561
|| || || || || ||||| |||| ||| ||| ||||| |||||| |||| | |
Sbjct 10565 GGCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCT 10506
Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 518621
| || ||||| || || || |||| | || | || | |||||||||||| ||||| |
Sbjct 10505 TCGCGGCATCACCGATAAGTCGTTCAGAGTCATTGAAAGCAACATATGATGGTGTTGTTC 10446
Query 518622 GATTACCTTGATCATTCGC 518640
|||| || ||||| || ||
Sbjct 10445 GATTGCCCTGATCGTTGGC 10427
>seq218
Length=57847
Score = 86.0 bits (94), Expect = 5e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 668846 AGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATG 668905
|| |||| ||| |||||||||||||| ||||| ||| |||||||||| |||||||| |
Sbjct 33896 AGGTTAAAAGGAAAAGAAGGTCGTATGAGAGGTAATCTGATGGGAAAGCGTGTCGACTTT 33955
Query 668906 TCTGCACGTACAGTTATTACTTCTGATCCCAA 668937
|| || || || |||||||| ||| |||||
Sbjct 33956 TCAGCGCGAACGGTTATTACCGGTGACCCCAA 33987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780765630951664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |