Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq154 147 3e-30 seq259 129 7e-25 seq841 123 3e-23 seq1015 93.3 5e-14 seq537 91.5 2e-13 seq480 84.2 3e-11 >seq154 Length=281 Score = 147 bits (162), Expect = 3e-30 Identities = 196/270 (73%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 269 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 210 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || || || || ||||||||||| ||||| || || | ||| Sbjct 209 TCCTCAATAGTCAAAAGAGAGACGTCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 150 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | || ||||| || |||||||| |||||||| || || || || || Sbjct 149 TTCTTCTCGCCCTCGGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 90 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || |||| || |||| | || || ||||| | | || || || || || || || Sbjct 89 TTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACG 31 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||| || ||||| |||||||| ||||| || Sbjct 30 TTGAGAGTCGTTGAAGTAGGCGGGGACGGT 1 >seq259 Length=98840 Score = 129 bits (142), Expect = 7e-25 Identities = 703/1115 (63%), Gaps = 23/1115 (2%) Strand=Plus/Minus Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929 ||||||| ||| | ||||| ||||| ||| | || || || | | | |||||| | Sbjct 84696 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 84637 Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989 ||| || ||||||||||| || |||| || || | |||||||| || || |||| Sbjct 84636 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 84577 Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049 | || | || ||||||| || | || | || |||| | ||| | | || | Sbjct 84576 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 84517 Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109 | |||| || |||||||| ||||||| ||| | || | || ||||| || || ||| Sbjct 84516 AAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA--GTT 84459 Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167 | | | || ||| || |||| || || ||| | ||| |||||| Sbjct 84458 GCGGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 84399 Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224 | || |||| | || || | || || || || || || ||| | || || Sbjct 84398 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGG--TCTAC 84342 Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284 | | || | || | || || |||||||| || || ||| || | | | | Sbjct 84341 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 84282 Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344 ||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| || Sbjct 84281 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 84222 Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404 ||| || || || ||||| || || ||| || || || |||| | | Sbjct 84221 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 84162 Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464 | || || ||||| || | ||| | | ||| || | | || | || Sbjct 84161 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 84102 Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524 ||| |||| ||||| | |||||| |||| |||||| ||||| | ||| || || Sbjct 84101 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 84042 Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584 | ||||| | | | ||||| ||||||||||| || || |||||||| | ||| | Sbjct 84041 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 83982 Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642 ||||| | ||| | || || || ||| |||| |||| || | ||| || ||| Sbjct 83981 GATCCAGAGGGCGTAGAAAAGATCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 83924 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 | | || | || || | | ||| |||||||| || || | ||||| || | | Sbjct 83923 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 83864 Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756 || | ||||| || |||||| || |||| || || | || || |||| Sbjct 83863 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 83807 Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816 | ||| ||||| || || | ||| ||||| || || ||| | || || ||| Sbjct 83806 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 83747 Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876 || | || ||||| ||| | |||||||| || || ||| ||| | ||||| Sbjct 83746 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 83687 Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936 || | |||||||| ||||| || || || ||||| | || | ||||| || ||| Sbjct 83686 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 83627 Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971 |||||||| |||| ||| ||||| || ||||| || Sbjct 83626 GACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 83592 >seq841 Length=88643 Score = 123 bits (136), Expect = 3e-23 Identities = 267/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 ||||| | |||||||| || |||||||| || | || || || || | ||||| | | Sbjct 18885 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGGGCG 18944 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450 | | || || || ||| || | || ||||| | |||||| |||||| Sbjct 18945 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCAAGGAGG 19004 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 | ||||| || |||||||| | || || || || || || || ||||| ||| Sbjct 19005 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 19064 Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568 | ||| || | |||| | | | || ||||| || ||||||||||||| ||| || | Sbjct 19065 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCGAAAGTACCACCACCCAAGTCGAAGA 19122 Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 |||| ||||| || || || | |||| || |||||||| || ||||| || || | Sbjct 19123 TGAGGACGTTTCGCTCCTCCTCGGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 19182 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 | ||||| || |||||||| || || || || || ||||| | | || || || || Sbjct 19183 TAGGTTCGTTGATAATACGGAG-CACCTCAAGACCGGCAATGGCACCGGCGTCCTTAGTG 19241 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 || | || || || ||||| |||||||| || || Sbjct 19242 GCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 19276 >seq1015 Length=64841 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || ||||| | | ||| | ||||| ||| | || |||| ||| |||||||| Sbjct 243 ATGACCTTGAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 302 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || | ||||| || |||||||| ||||| | ||||||||||| |||||||| Sbjct 303 CCAATCAATCGCTTGGCGTCAAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 362 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| ||||| | || || | || | || |||||||| || || || ||| Sbjct 363 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 419 Query 8057 CGATTCCCTTGGTCGTTCGC 8076 || || || ||||||||||| Sbjct 420 CGGTTACCCTGGTCGTTCGC 439 >seq537 Length=10869 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 ||||||||||||| |||||||||||||||||| | || || ||||| || || || || | Sbjct 10372 CAATAATTTCTACCCGGTCGTTTTGCCAGACGGCAACACATGAATAGGTAGTGCCCAAGT 10313 Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160 |||||||||| |||| ||||| || Sbjct 10312 CAATACCGATAGCTTTTGTCATGTT 10288 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | ||||| ||||| ||| | || || | || ||| || | Sbjct 10624 GATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAACTTCGGCATCGTTAAATTTACG 10565 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| | ||||| ||||| ||||| ||||| | || ||||| || ||||||||| Sbjct 10564 GCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCTT 10505 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || |||||||| ||||| | || | || || || || ||||| || || Sbjct 10504 CGCGGCATCACCGATAAGTCGTTC---AGAGTCATTGAAAGCAACATATGATGGTGTTGT 10448 Query 8056 TCGATTCCCTTGGTCGTTCGC 8076 |||||| || || ||||| || Sbjct 10447 TCGATTGCCCTGATCGTTGGC 10427 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 7685 GTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACT 7744 || || || ||||| || ||||| |||||||| ||||| || || || || | | ||| Sbjct 10869 GTAGCCTGACGTTGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACG 10810 Query 7745 TTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATC 7804 | |||||| || | || || | || ||||| || ||||||||||| || |||||| Sbjct 10809 GTGCCACCGAGGTAAGCCTCAGCAGTCTCCTTCATCTTAGTAAGAACCATGGAAGAAATC 10750 Query 7805 TCTTCAGCCG 7814 ||||||| || Sbjct 10749 TCTTCAGGCG 10740 >seq480 Length=11289 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397 |||||||||||||| ||||| ||||||||||| || || || || | ||| || Sbjct 7747 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 7688 Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457 || || || || || |||||||| ||||| || | |||| | ||||| Sbjct 7687 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 7628 Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516 || |||||||| | ||||| ||||||||||| |||| | || || ||||| ||||| Sbjct 7627 CCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 7569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635123717600960