Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq900 111 2e-19 seq305 93.3 4e-14 >seq900 Length=79834 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| || || |||||||||||| | || || || || || || ||||| | Sbjct 78018 GTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCG--TCTTCAAGTTGCTTTC 77961 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| |||||||| || |||||||| |||||| || Sbjct 77960 CGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCT 77901 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || ||| | | || || || | ||| | |||||||||||| || | Sbjct 77900 TGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGG 77841 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 77840 TTTTGACGAAGATTTGCAT 77822 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| || ||||| || ||| | || | || || ||||| |||||||| || |||||| Sbjct 78204 TCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTTG 78145 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||| | || || || || | |||| Sbjct 78144 TCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGATA 78085 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| || |||||||||||||| Sbjct 78084 GTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78050 >seq305 Length=81078 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| || ||| | || | ||||| ||||| || ||||| || ||||| Sbjct 65837 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGGGGGATACCCTCCTT 65896 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| || ||| || |||| ||||| Sbjct 65897 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGAT 65956 Query 133625 GGTTTTGCCGGTCAGA 133640 ||| || ||||| ||| Sbjct 65957 GGTCTTTCCGGTAAGA 65972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413887082560