Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq900 143 6e-29
seq305 104 6e-17
>seq900
Length=79834
Score = 143 bits (158), Expect = 6e-29
Identities = 150/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | || ||| || ||||||||||| || ||||| | ||||||||||| | ||||
Sbjct 78830 CGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTT 78771
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| || || || || |||||||| |||||||| || || || || |||||
Sbjct 78770 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78711
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| ||| |||||||| || | ||| || || |
Sbjct 78710 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGA 78651
Query 225673 GTGATCGTCTTGCCCGT 225689
||||| ||||| |||||
Sbjct 78650 GTGATTGTCTTACCCGT 78634
Score = 141 bits (156), Expect = 2e-28
Identities = 164/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | || ||| || ||||||||||| || ||||||| ||||||||||| | ||||
Sbjct 78042 CGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 77983
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || ||||| || ||||| || ||||| || | ||| || ||||| || || |||||
Sbjct 77982 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCC 77923
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| ||| |||||||| || | ||| || || |
Sbjct 77922 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGG 77863
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || ||||| || | ||||| | ||| | ||||||
Sbjct 77862 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77822
Score = 132 bits (146), Expect = 1e-25
Identities = 136/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595
|||| |||| | ||| || |||||||| |||||||| ||||| ||||| | |||||| |
Sbjct 77720 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 77661
Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTG 225655
|||| || || ||||| |||||||| |||||||| ||| ||| ||||||||||| |
Sbjct 77660 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 77601
Query 225656 AGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| | ||||| || | ||||| ||||| || || | ||| || | ||| | ||||||
Sbjct 77600 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77543
Score = 129 bits (142), Expect = 1e-24
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592
|| ||||||| | |||||||| ||||| || || ||||| || |||||||| | |||||
Sbjct 78230 CACTGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTT 78171
Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652
||||||| || || ||||| |||||||| || ||||| ||| ||| || |||||||
Sbjct 78170 GTTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGT 78111
Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712
| |||| ||| || || | ||||| ||||| || || | ||| || | ||| | ||||
Sbjct 78110 CAGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCA 78051
Query 225713 T 225713
|
Sbjct 78050 T 78050
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| |||||||| || || ||||| ||||||| ||||| |||| | ||| | |||||
Sbjct 78540 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78481
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || || || ||||| || || | |||||| || || || |||||||||||||||||
Sbjct 78480 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78421
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || ||||| ||||| || | || || || | ||||| |||
Sbjct 78420 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTC 78361
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || |||||||| ||
Sbjct 78360 TTTCCGGTCAAAGTCTT 78344
>seq305
Length=81078
Score = 104 bits (114), Expect = 6e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609
|| || || || || |||||||| || |||||||| | ||| |||||||| || || |||
Sbjct 65829 GTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGGGGGATA 65888
Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669
|| |||||||| |||||||| ||| ||| ||||||||||| |||| || || ||
Sbjct 65889 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCG 65948
Query 225670 AACGTGATCGTCTTGCCCGT 225689
| ||||| ||||| || ||
Sbjct 65949 AGGGTGATGGTCTTTCCGGT 65968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192513720473936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |