Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq259 100 4e-16
seq247 89.7 7e-13
>seq259
Length=98840
Score = 100 bits (110), Expect = 4e-16
Identities = 293/449 (65%), Gaps = 2/449 (0%)
Strand=Plus/Minus
Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974
||| ||| ||||||||| || || |||| || | | ||||||||| || || ||
Sbjct 84092 ATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACA 84033
Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034
||| | | ||| || ||||| | || || ||||| || ||||| | ||||| ||
Sbjct 84032 CATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAG 83973
Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT-TTAAGATCGA 78093
|| || ||||| || | || || || || || ||||| ||||| || |
Sbjct 83972 GGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAA 83914
Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTT 78153
|| || | | ||||| ||||| || || ||||| || || | | ||||| || |
Sbjct 83913 TGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCT 83854
Query 78154 TATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213
| ||||| || ||||| | |||| || ||| | ||| ||| | ||| ||||| |
Sbjct 83853 TGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGA 83794
Query 78214 TACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAA 78273
| ||||| || ||||| || || | ||| || || | || || ||||| ||
Sbjct 83793 TGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAA 83734
Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333
|| | || || || || || |||| || || |||| || || | |||||||
Sbjct 83733 TGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGT 83674
Query 78334 AGATACCCTCTATACTGTCATCCATCATG 78362
||||||| || || ||||||| |||||
Sbjct 83673 AGATACCATCAATGGAGTCATCCTTCATG 83645
>seq247
Length=50369
Score = 89.7 bits (98), Expect = 7e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221
|| ||||| ||||| || || ||||| |||||||| || || ||||| | || | ||
Sbjct 36819 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 36878
Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281
|| | ||| || ||||| || ||||| ||||||||||| |||||||| ||| |||||
Sbjct 36879 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 36938
Query 48282 GC 48283
||
Sbjct 36939 GC 36940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694658866236160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |