Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq259 100 4e-16 seq247 89.7 7e-13 >seq259 Length=98840 Score = 100 bits (110), Expect = 4e-16 Identities = 293/449 (65%), Gaps = 2/449 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||| ||| ||||||||| || || |||| || | | ||||||||| || || || Sbjct 84092 ATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACA 84033 Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034 ||| | | ||| || ||||| | || || ||||| || ||||| | ||||| || Sbjct 84032 CATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAG 83973 Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT-TTAAGATCGA 78093 || || ||||| || | || || || || || ||||| ||||| || | Sbjct 83972 GGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAA 83914 Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTT 78153 || || | | ||||| ||||| || || ||||| || || | | ||||| || | Sbjct 83913 TGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCT 83854 Query 78154 TATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213 | ||||| || ||||| | |||| || ||| | ||| ||| | ||| ||||| | Sbjct 83853 TGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGA 83794 Query 78214 TACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAA 78273 | ||||| || ||||| || || | ||| || || | || || ||||| || Sbjct 83793 TGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAA 83734 Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333 || | || || || || || |||| || || |||| || || | ||||||| Sbjct 83733 TGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGT 83674 Query 78334 AGATACCCTCTATACTGTCATCCATCATG 78362 ||||||| || || ||||||| ||||| Sbjct 83673 AGATACCATCAATGGAGTCATCCTTCATG 83645 >seq247 Length=50369 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 || ||||| ||||| || || ||||| |||||||| || || ||||| | || | || Sbjct 36819 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 36878 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 || | ||| || ||||| || ||||| ||||||||||| |||||||| ||| ||||| Sbjct 36879 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 36938 Query 48282 GC 48283 || Sbjct 36939 GC 36940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694658866236160