Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
65.1_202017-04-19] 1,144 sequences; 18,447,454 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq900 105 2e-17
>seq900
Length=79834
Score = 105 bits (116), Expect = 2e-17
Identities = 140/193 (73%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| ||||| ||||| ||||| ||||| || |||||||||| | ||||| ||||||||
Sbjct 78819 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTC 78760
Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
|| ||| ||||||||||| || | ||||| || | | ||| || ||||| |||||
Sbjct 78759 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 78700
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071
|| || |||||| | || | | | || ||| || ||||||||||| || ||
Sbjct 78699 GATCTTGGCCTTGACATTGTCGATGGTATC---GCTCGATTCGACTTCAAGAGTGATTGT 78643
Query 152072 TTTGCCCGTGAGA 152084
|| ||||| |||
Sbjct 78642 CTTACCCGTAAGA 78630
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| ||||| ||||| ||||| || |||||||||||||| |||| | ||| | |||||
Sbjct 78541 GAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATC 78482
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || ||| || || || || | | ||||| || | | || |||||||| ||
Sbjct 78481 CTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC 78422
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || || || | || | |||| || ||| ||||| ||||| |||||
Sbjct 78421 CTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGT 78362
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | |||||| || |||| ||||||
Sbjct 78361 CTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78329
Score = 96.9 bits (106), Expect = 8e-15
Identities = 128/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCT 151986
|||| |||| | ||| || |||||||| || || || || ||||| | | ||||
Sbjct 77720 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 77661
Query 151987 GGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG 152046
|||| | | ||| || ||||| || || || || |||||| | || | | |||| |
Sbjct 77660 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 77601
Query 152047 AACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||| ||||||||||| ||||| || || ||||||||||| ||||| | |||||
Sbjct 77600 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77543
Score = 95.1 bits (104), Expect = 3e-14
Identities = 130/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984
||||||| | ||||||| ||||| || || ||||| ||||||||||| | | ||
Sbjct 78227 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTT--CCGGCGAAGATCAATCGTTG 78170
Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044
||||| | | ||| || ||||| || ||||| || |||||| | || | | ||||
Sbjct 78169 TTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC 78110
Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||| || || || |||||||| ||||| | ||||||
Sbjct 78109 AGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153803887871624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |