Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq387 95.1 1e-14
>seq387
Length=80018
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | ||| || | |||| || ||||| |||||||| |||||||||
Sbjct 995 TACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGG 1054
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| || ||| || || |||||||| ||| ||||||| || |||||||| || |
Sbjct 1055 AAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGG 1114
Query 118630 GTATGCCCTCCTTGTCT 118646
| || ||||||||||||
Sbjct 1115 GGATACCCTCCTTGTCT 1131
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | ||| || | |||| || ||||| ||||| || |||||||||
Sbjct 1783 TACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGG 1842
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| || || || || || ||||| ||| | || | |||||||| || ||||
Sbjct 1843 AAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAG 1902
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC---T 118686
| || |||||||||||| || || || || | |||| ||| || |||| |
Sbjct 1903 GGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC---GCTCGATT 1959
Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| || | ||| | ||||||||||| || ||||| || || || |||||
Sbjct 1960 CGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433824049943092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |