Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq387 87.8 1e-12
>seq387
Length=80018
Score = 87.8 bits (96), Expect = 1e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 45176 CGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCC 45235
||| | || |||||||| ||||||||||| ||||| || |||||||| ||||| | ||||
Sbjct 1623 CGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCC 1682
Query 45236 TCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACG 45295
||||||||| ||| || ||| || | | | |||| || ||||| |
Sbjct 1683 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGA 1742
Query 45296 GTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || ||||| || || |||||||| || || || |||||
Sbjct 1743 GTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1783
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| |||||| || || ||||| ||| || || |||| || |||||
Sbjct 1809 TGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCGTCTTCAAGTTGC 1868
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
||||||||||| ||||| ||||| ||||| ||||| | |||||||||||| || ||
Sbjct 1869 TTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTG 1928
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | | || | || || || | |||||| || ||||| ||
Sbjct 1929 GCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTG 1988
Query 45314 AGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344
|| || || || ||||||||||| |||||
Sbjct 1989 AGGGTTTTGACGAAGATTTGCATACCGCCTC 2019
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
||||| || |||||||||||| || ||| | || || |||||||| || || ||
Sbjct 1314 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAA 1373
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
||||| || || || || ||||| | ||| ||||||||| ||| || ||||||
Sbjct 1374 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTG 1433
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | |||| ||| || || | || || ||||| || |||| |||||| |||
Sbjct 1434 TCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACA 1493
Query 45326 AAGATTTGCATGTTGCCTC 45344
||||| ||||| |||||
Sbjct 1494 AAGATCTGCATACCGCCTC 1512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395069417210221
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |