Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq387 143 3e-29 seq690 109 7e-19 >seq387 Length=80018 Score = 143 bits (158), Expect = 3e-29 Identities = 184/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| ||||||||||||| | || | |||||||| || || || Sbjct 16196 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 16137 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || || ||||| |||||||| || ||||| ||||| || || || ||||| Sbjct 16136 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 16077 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757 ||| || || || |||||||| ||||| |||| ||| || ||| | | |||| Sbjct 16076 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 16017 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 16016 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 15957 Query 33818 AAAGAGATAGTTT 33830 |||||| ||||| Sbjct 15956 AAAGAGGAAGTTT 15944 >seq690 Length=111065 Score = 109 bits (120), Expect = 7e-19 Identities = 594/953 (62%), Gaps = 69/953 (7%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || || || |||| | | | | || ||| || || | |||||||| | | Sbjct 14653 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14712 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306 ||| || || || | || || ||||| || ||||| | ||||| || || || || Sbjct 14713 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14772 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63365 | ||||| | | || ||||| || || ||||| ||||| || | ||| | Sbjct 14773 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14830 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | ||||| ||||| || || | || ||||| | | ||||| || ||||| || Sbjct 14831 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14890 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || ||||| Sbjct 14891 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14950 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAG 63544 || |||||||||||||| || ||| || | ||||| ||||| ||| ||| || Sbjct 14951 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 15009 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| || || || || | || ||||| || || || | || || ||||| || Sbjct 15010 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 15069 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 || ||| ||||| ||||| | || || || ||||||||| | || | ||| Sbjct 15070 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 15129 Query 63665 TCCCGCATTAAA------------------------------------------------ 63676 || || || || Sbjct 15130 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 15189 Query 63677 -TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735 || ||||| ||||| || || || | | ||||| | ||||| || ||||| || Sbjct 15190 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15249 Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795 || ||| || | | ||| || || || ||||| ||||| | |||||||||||| | Sbjct 15250 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15309 Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 || ||||| ||| || || | | | ||| ||| | || | ||| || ||||| | Sbjct 15310 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15369 Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATT 63915 | |||||||| | |||||||| || || |||||| | || | ||| ||||||| | Sbjct 15370 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GT 15426 Query 63916 TGTTAACTATATCCATG-----GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTT 63970 ||| | | | || || || || | ||| || |||||||| || || | || Sbjct 15427 TGTCCATGACAACCTTGTAGACGTCATCAT--CAATCATGGGAGAATGCTTGCCGGTCTT 15484 Query 63971 AGGATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCC 64028 || || || | || || || || | | || || || | || || || ||| Sbjct 15485 GGGGTTGACCCA--TGCATGAAGGTCATGTACGACGGCAGAGAAGACCTTCTTGGTCTCC 15542 Query 64029 TTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 || || || || || || || |||| ||| || || || |||||||||||||| Sbjct 15543 TTATGAAGGTTGGAAATAGCGATTCGGGCAGCAAGGATAGCATAATCCGGATG 15595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629808144863280