Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq690 235 1e-56
>seq690
Length=111065
Score = 235 bits (260), Expect = 1e-56
Identities = 641/978 (66%), Gaps = 14/978 (1%)
Strand=Plus/Minus
Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651
|| || ||||| || ||||| || | |||||||| || ||||| || |||||||
Sbjct 15120 CCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTAC 15061
Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711
|| || || |||| ||||||| || ||||||| ||| || || |||||| | ||
Sbjct 15060 GATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATT 15001
Query 363712 CACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTG 363771
|||||| | ||||| || | |||||| ||| || || ||||| || || |
Sbjct 15000 CACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCATC 14941
Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831
|||| ||||| || | | ||| || || | ||||| || || ||||| |||
Sbjct 14940 ATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAG 14881
Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891
|| || || || || || ||||| |||||| || || ||| | ||||| || ||
Sbjct 14880 CGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATT 14821
Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951
|| | |||| ||| || || ||||| | || || |||||||| ||||| || ||
Sbjct 14820 GACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTC 14761
Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010
||| | || || | ||| |||||||| || || | | | | ||||| |||||| ||
Sbjct 14760 TGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGG--ACTCTTATGT 14703
Query 364011 --CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068
||| | ||| || || || ||| |||| || | ||||| || | || || ||
Sbjct 14702 GTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTGAAAAGCTTTAT 14644
Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128
|| | || || | |||| |||| | || || || || |||||||| |||||
Sbjct 14643 GAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTC 14584
Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188
|||||| | || | || | ||||| || || || || | ||||| ||| | |
Sbjct 14583 GCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTACATCTGCTACAAGGATGCTGCC 14524
Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248
||| |||||||||||| ||||||||||||| || | || ||||| ||||| ||
Sbjct 14523 AACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAACCTCTGTACTGAA 14464
Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308
|| || || || | |||| || || ||| || ||||| ||||| || | || |||
Sbjct 14463 ATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAATCTTGCTTCTCTTGCTCTT 14404
Query 364309 CCGGCGTTTGTAAAAGATGGTAC-------TTTTGACCACCAGCATCTTTATGACGTAAC 364361
|| || || || | | ||| || | |||| | | | || | || | ||
Sbjct 14403 CCTGCCTTCGT-AGACCTGGAACGTCGCGTCTATGACTTCAAAAAGCTGCACGAGATTAC 14345
Query 364362 CTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA 364421
| | || ||| || || |||| || ||| | || || |||||| | |||||
Sbjct 14344 CAAGGTTGTTACAAAGAACCTTGACACTGTAATCACCCGTAACTACTATCCAGTGCCTGA 14285
Query 364422 AGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481
||| || || ||||| ||||| || ||||||||||||| ||||| || || ||
Sbjct 14284 GGCCCGCAACTCCAACATGCGCCATCGGCCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGA 14225
Query 364482 CGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGA 364541
|| ||| ||| || ||| | || || || |||| ||| | | || |||| |
Sbjct 14224 CGCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGCTAGGGAACTCAATATCCA 14165
Query 364542 GATCTTTGAAACAATGTA 364559
|||||| || || || ||
Sbjct 14164 GATCTTCGAGACGATATA 14147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303333544239182
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |