Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq959 138 2e-27 seq403 111 3e-19 seq818 98.7 2e-15 >seq959 Length=11598 Score = 138 bits (152), Expect = 2e-27 Identities = 240/349 (69%), Gaps = 0/349 (0%) Strand=Plus/Plus Query 218507 TCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGC 218566 ||||| || | || || || |||||||||| ||||| ||||| | |||| | Sbjct 7668 TCCCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTCTTCTCCATGGCTGATAATATCC 7727 Query 218567 GTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG 218626 | || ||||| |||| || || ||||| || ||||| ||| | ||||||| Sbjct 7728 GATCGATTCCATCTGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTT 7787 Query 218627 CATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686 |||||||| ||||| ||||||| |||||||||||| || | || || || || | Sbjct 7788 GTTTCAAGCGAAACCTCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGG 7847 Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746 | | | | || || || ||||| ||| || ||||||| ||| | |||| Sbjct 7848 AGAAAACCGCATATCACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCAC 7907 Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806 | ||| || |||||||||||||| || ||||| |||||||| || |||||| ||| Sbjct 7908 AAAACTTCGTCGGCAGTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTC 7967 Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855 |||| ||||| || || ||||||||| | |||||||| ||||| Sbjct 7968 GTCTTGCAGGTGGTAAAGACGCAGCTTCTGCCCGTTATATCTTCACAAA 8016 >seq403 Length=185741 Score = 111 bits (122), Expect = 3e-19 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||| ||||| ||| | ||||| |||||||| | || |||| ||||| ||||| || Sbjct 132083 TTGGTCCCAACGGTTCCGGTAAATCTACCCTTGTTAAGCTCCTCACTGGTGAGACTGAGC 132142 Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 ||| ||| | |||| | | |||||||| || ||| || || | ||||||||| || | Sbjct 132143 CCAACCTGGGCGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAAC 132202 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 |||||||||||||||| || |||||||| ||| ||||| Sbjct 132203 ACGCTTTCCACCACATTGACAACCACCTTGACTCTACTCC 132242 Score = 100 bits (110), Expect = 6e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 |||||||| || || ||||||||||||||||| || || | || || ||||| | Sbjct 131602 GGTTCTCTTTCTGGCGGTTGGAAGATGAAGCTTGCTCTTGCCCGAGCTATTCTCTTCAAG 131661 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| |||| || ||||| ||||||||| |||| ||||| | |||| Sbjct 131662 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 131721 Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 || | ||| || ||| || | ||| | | ||| ||||||||||||||||||| Sbjct 131722 CTGATCAACTATCTCACCTCCCTTACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 131780 Query 279878 TGGCTTCCT 279886 || |||||| Sbjct 131781 TGACTTCCT 131789 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 280719 GGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGC-AACACCC 280777 |||||||| || || |||||||| || | ||| |||| || ||| |||| || |||| Sbjct 132696 GGTCTTTCCGGTGGTCAGAAGGTTAAGGTCGTCCTCGGTGCCGCTACCTGGCGAAGACCC 132755 Query 280778 TCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 ||| | ||| |||||||||||||||||||||||| ||||| ||| Sbjct 132756 -CACATCATCTGTCTCGACGAGCCTACCAACTATCTCGACCGAGAG 132800 >seq818 Length=185620 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | |||||||| ||||| ||||| |||||||| ||||| |||| || || ||| Sbjct 20950 GGTATCGTCGGACCCAACGGTGCCGGTAAATCTACCCTCATCAAGCTCCTCACCGGTGAG 20891 Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 || | | || || || || || ||||| ||| | || | | ||| ||| Sbjct 20890 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCACCCCGCTCTTCGTGTAGGTTATGTC 20834 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| || |||||||| ||| | | ||| |||||| |||| || || |||||| Sbjct 20833 GCTCAGCATGCGTTCCACCATATCAACCAGCACTTGGACAAGACTGCTGTGCAGTACATT 20774 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 20773 CAGTGGCGATA 20763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820983840041