Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq387 170 4e-37 seq744 104 4e-17 seq959 102 2e-16 seq403 100 5e-16 >seq387 Length=80018 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || |||||||| |||||||| || |||||||| Sbjct 1785 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 1844 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| |||||||| || | || || ||||| || || Sbjct 1845 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 1904 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||| ||||| |||||||| |||||||| || ||| ||||| || Sbjct 1905 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGAC 1963 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | ||| |||||||| || |||||||| |||||||| || ||||| Sbjct 1964 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2011 Score = 145 bits (160), Expect = 1e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || |||||||| ||||| || || |||||||| Sbjct 997 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 1056 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || |||||||| ||||||| ||| || || || || Sbjct 1057 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 1116 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||| ||||| ||||||||| |||||||| || ||| ||||| || Sbjct 1117 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GCTCGATTCGAC 1175 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||| | ||||| || || ||||| || Sbjct 1176 TTCAAGAGTGATTGTCTTACCCGTAAG 1202 Score = 138 bits (152), Expect = 2e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||||||| ||||| |||||||| | |||||| || || || || | || ||| ||| Sbjct 2115 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 2174 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| |||||||| ||||||||||| | Sbjct 2175 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 2234 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| | ||||| || || || ||||| ||||||||||| || ||||| Sbjct 2235 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 2290 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || || ||||||||||| || ||||| Sbjct 1278 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAA 1337 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || || || || || | || ||| || || || ||| Sbjct 1338 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 1397 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| ||||| ||| ||||| ||||| | || || ||| Sbjct 1398 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 1457 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| || | |||||||| || |||||||| Sbjct 1458 TCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 1504 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || | || | ||||| || | ||||| |||||||| || | || ||||||| Sbjct 1608 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 1667 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| |||||||| |||||||| || |||||||| | Sbjct 1668 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 1727 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | ||||| || ||||| || || ||||||||||| |||||||| Sbjct 1728 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1783 >seq744 Length=81122 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || ||||| || || || | |||||| |||||||| || | || |||||| Sbjct 15096 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGG 15037 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| | |||||| ||||||||||| | Sbjct 15036 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 14977 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || | ||||||||| ||||| || || Sbjct 14976 GACTCAACCTCGAGGGTGATGGTCTTTCCGGTAAG 14942 >seq959 Length=11598 Score = 102 bits (112), Expect = 2e-16 Identities = 266/401 (66%), Gaps = 10/401 (2%) Strand=Plus/Minus Query 176132 GGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAG 176191 |||||| | | || || |||||||| || || || || | | |||||| |||| Sbjct 8122 GGTGGGCATGAAATAATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAA 8063 Query 176192 ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATA 176251 | || || || |||||| || | || || | | | || | |||||||||||| Sbjct 8062 CCCGTCATCTGCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATA 8003 Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311 | ||||| || ||| || || || ||| || | ||| ||||| ||| ||| Sbjct 8002 ACGGGCAGAAGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATC 7943 Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTG 176371 |||| ||||||||| || || ||| ||| ||| || | ||||| |||| | | Sbjct 7942 CAGCAGATTGATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTG----G 7887 Query 176372 GAG--AGAC--GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACT 176427 || | || || || || |||||||| ||| ||||| ||| ||||||| || Sbjct 7886 AAGTCAAACTGGCTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCT 7827 Query 176428 GCGCGACTTTGATTTCTTGTACGAGGTTGCGCTT-CAACGCCGAGAACAGAATCTTCCGC 176486 | ||||| |||||||||| |||||| ||||| ||| | | || |||| ||| ||| Sbjct 7826 GAGCGACCTTGATTTCTTTGGTGAGGTTTCGCTTGAAACAACCA-AAGAGAACCTTTCGC 7768 Query 176487 TGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527 || || || ||||| ||| | || || ||||| || || Sbjct 7767 TGACCAGGTTTGAGACCGTCGGCCACAGATGGAATCGATCG 7727 >seq403 Length=185741 Score = 100 bits (110), Expect = 5e-16 Identities = 441/683 (65%), Gaps = 30/683 (4%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| ||| || ||| |||||||| ||||| ||||||||| Sbjct 132266 TATCGCCAGAGCATGTACTCAAGGGGAGTAGAGTCAAGGTGGTTGTCAATGTGGTGGAAA 132207 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACA-GAGCCCCGAG- 225095 || || ||||| ||||| | ||| || ||| || |||||||| || || | || || Sbjct 132206 GCGTGTTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCGCCCAGG 132147 Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | ||| || ||||||| ||| | || |||| || || | ||| ||||| Sbjct 132146 TTGGGCTCAGTCTCACCAGTGAGGAGCTTAACAAGGGTAGATTTACCGGAACCGTTGGGA 132087 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGC---GAGTTCACGT-----TGCTGA 225206 |||| | | ||| || ||||| | | ||||| ||| | ||| ||||| Sbjct 132086 CCAAGAATGGCAACTCGAGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGCTGCTG- 132028 Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266 ||| || |||| |||| || | ||| |||| ||| | | | | Sbjct 132027 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 131972 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG--GTCACC-G 225323 |||||| | | ||| || |||| || | || | || ||| | ||| | | Sbjct 131971 CCTTGGTCTTCACACCATCAAGGAGGGGAGGGTTAGGAAGCTTGAACTGGTAGTCCTCAG 131912 Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382 || | | || | |||||| || |||||| ||| | || |||||| | ||| Sbjct 131911 CGACATCGAGTTGGTAGTAGGACTTAGCCTCAGGGACATGCTGG-ACGAAATCCTCAAGG 131853 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442 || || ||| | || | | ||||| ||| || | | |||| | || ||| | Sbjct 131852 TTACCAGGGTACCTCTTCAACTTGAAGTTGTTAAGATGAAGAAC----GTCGGTAACAGT 131797 Query 225443 GCG-TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCCC 225499 || | ||||||| |||||||||| || ||||||||||| | ||| || || ||| Sbjct 131796 TCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTAAGGGAG 131739 Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559 |||| | |||| ||||| | ||||| || |||| |||||| ||||| ||||| Sbjct 131738 GTGAGATAGTTGATCAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTCG 131679 Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619 || | ||||| || || | | ||| || || || | |||| |||||||| ||||| Sbjct 131678 AGCAAGAGGATATCGGCCTTGAAGAGAATAGCTCGGGCAAGAGCAAGCTTCATCTTCCAA 131619 Query 225620 CCCCCGGACAGGGAGCCGATTGA 225642 || || || || || || || || Sbjct 131618 CCGCCAGAAAGAGAACCAATGGA 131596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921608564143720