Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq387 127 2e-24
>seq387
Length=80018
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| |||| | |||||| || | ||| | ||| ||||||||| ||||||||||| |
Sbjct 1784 ACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGA 1843
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || |||| || || ||||| || ||||| || | |||||||||||| | ||
Sbjct 1844 AAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 1903
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | ||||||||| ||| || |||| | | | || ||||||||||| ||
Sbjct 1904 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGAC 1963
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | || ||||||||||| || || || || || |||||||||||
Sbjct 1964 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2011
Score = 102 bits (112), Expect = 9e-17
Identities = 149/208 (72%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| |||| | |||||| || | ||| | ||| ||||||||||||||||||||| |
Sbjct 996 ACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGA 1055
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || || || || || || ||||| |||||||| ||||| || | ||
Sbjct 1056 AAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGG 1115
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159
| | ||||||||| ||| || |||| ||| | | | || ||||||||||| |
Sbjct 1116 GATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCGCTCGATTCGA 1174
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAG 42187
| || | ||||| || || ||||| ||
Sbjct 1175 CTTCAAGAGTGATTGTCTTACCCGTAAG 1202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543204645017840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |