Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq690 174 2e-38
seq387 161 1e-34
seq959 102 1e-16
>seq690
Length=111065
Score = 174 bits (192), Expect = 2e-38
Identities = 721/1121 (64%), Gaps = 35/1121 (3%)
Strand=Plus/Minus
Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785
|| |||||||| ||||| || ||||||||||||| || ||||| | || | |||
Sbjct 15144 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 15085
Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845
|| || || || |||| || |||| ||||||| ||||| || ||||| |||
Sbjct 15084 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 15025
Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903
|| |||||||| || | ||||| || || || | || || | ||| || || |
Sbjct 15024 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAG--GGCTCCTACATTGCCG 14967
Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963
|||| |||||| | || | || || ||||| ||||| || | | |||||||||| |
Sbjct 14966 GTACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTC 14907
Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017
| || || | |||| ||| | |||| | || |||| ||||||||||||
Sbjct 14906 GATACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGC 14850
Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077
| |||||||| ||| | | || ||| |||| || | ||||| ||| | |||||||
Sbjct 14849 CTTGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGG 14790
Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137
|| || ||||| |||| ||| |||||||| | ||||| ||||||||| | || |
Sbjct 14789 TACGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCG 14730
Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197
| ||| ||||| |||| | ||||| | | || || || || |||| |
Sbjct 14729 AATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTT 14670
Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CG 112256
||||| || |||||| || || | ||||| || | | | | | || |
Sbjct 14669 ACGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAA 14611
Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315
|| | ||| | || | | ||| || || ||| || |||||||||||||||||
Sbjct 14610 ACTATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGT 14552
Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375
|| || || ||||| || || ||| ||| || |||||| | | |||
Sbjct 14551 CCCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTAC 14492
Query 112376 GATCAA---GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432
||||| ||| ||||||||||| |||||| |||| | | | |||||
Sbjct 14491 CATCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGT 14435
Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-A 112491
||||| ||||| || || || | ||||| || | || || || | || |
Sbjct 14434 TGCTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGA-CCTGGAACGTCGCG 14376
Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551
| ||| | |||| || ||||| |||| || ||| ||||| ||||| ||| |
Sbjct 14375 TCTATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTG 14316
Query 112552 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 112608
| || | || | || || || |||| || || || || || ||| | || |
Sbjct 14315 TAATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATC 14259
Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668
| || ||||||| |||||||| ||||| || || | ||||| |||| | |
Sbjct 14258 GGCCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGT 14199
Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728
| || |||| || || | |||| ||||| | || || ||||| || || ||||| |
Sbjct 14198 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGG 14139
Query 112729 CTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788
| ||||||||| | || | || |||| |||| | |||||| | | || ||||
Sbjct 14138 CGCTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTT 14079
Query 112789 CTCCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGG 112827
|||| | || | ||||| | ||||| | || |||||||
Sbjct 14078 CTCC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 14040
>seq387
Length=80018
Score = 161 bits (178), Expect = 1e-34
Identities = 214/289 (74%), Gaps = 10/289 (3%)
Strand=Plus/Plus
Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 102106
||||| |||| || |||||||| |||| || ||| | | ||||||| || || |
Sbjct 15909 CTCATCGACACCTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 15967
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 102163
|| |||| ||||| | |||||| || || |||||| | ||| | ||| |||
Sbjct 15968 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 16027
Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
|| ||| | || ||||||||| | || ||||| || |||||||||||||||||
Sbjct 16028 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 16084
Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282
|||||| ||| ||| | || | ||||| |||||||||||||||||||| ||||| ||
Sbjct 16085 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCT 16143
Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||| |||||||| |||||||| |||||||| |||||| || |||||
Sbjct 16144 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 16192
>seq959
Length=11598
Score = 102 bits (112), Expect = 1e-16
Identities = 282/427 (66%), Gaps = 4/427 (1%)
Strand=Plus/Minus
Query 175840 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 175899
||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | |
Sbjct 8167 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 8108
Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959
||||| |||||| | |||||| || |||| |||||||| | |||||| ||
Sbjct 8107 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 8048
Query 175960 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018
| ||||| ||| | |||| || || ||||| |||||||| | | || |
Sbjct 8047 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGGGCAGAAGCTG 7989
Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078
| || |||||||| ||||| |||||||| || || || || || |||||||| |
Sbjct 7988 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 7929
Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138
|||| || | | ||| | || || |||||| ||| | | | | ||||||
Sbjct 7928 TGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCAC 7869
Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197
| ||||| || || | ||||| | || | |||| ||| ||| || || || || ||
Sbjct 7868 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 7810
Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257
| |||| || | |||||| | | | |||||| || || ||| ||||||||
Sbjct 7809 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 7750
Query 176258 TCCGCCA 176264
|| ||||
Sbjct 7749 TCGGCCA 7743
Score = 82.4 bits (90), Expect = 9e-11
Identities = 117/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 176921 AGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTT 176980
|||||||| || || || | ||| || || || || | ||||| | ||| ||||| | |
Sbjct 6986 AGAGGGAAAACGCCATACTCATCACGTCCGACAACTGCAAGACCAGAAACGGCGAGAGCT 6927
Query 176981 TTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCC 177037
|| |||||||| || || |||| |||||| || || |||| || || |||| ||
Sbjct 6926 TTGGCAGAATCTCCTTCCGTCAGGATGAGAGTGCAGTTCTTGG-AGTTTCGGCCG--CCA 6870
Query 177038 GCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAATTTTG 177079
|| ||||||||||| || | || |||||||| |||| ||
Sbjct 6869 GCATTGTTCGCATCTTCAAGCTTTACAATACCAGAAATTCTG 6828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620733081104720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |