Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq387 96.9 2e-15
>seq387
Length=80018
Score = 96.9 bits (106), Expect = 2e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| | ||||| || ||| || || ||||| ||||| ||||| | || |||| ||
Sbjct 1295 AACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 1354
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| ||||| || ||||| || | ||||||||| || | || | || ||||||||
Sbjct 1355 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 1414
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||||| || ||| | || | ||| | ||| || |||| || || || ||
Sbjct 1415 AATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTT 1474
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||| || | |||||| |||||||||||||||
Sbjct 1475 TCCGGTCAAAGTCTTGACAAAGATCTGCATA 1505
Score = 84.2 bits (92), Expect = 1e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 34819 TTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCC 34878
|||| |||| ||||| || |||||||| || || | |||||| ||||| | || | |
Sbjct 1621 TTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATAC 1680
Query 34879 CCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGA 34938
|||||||||| ||||||| ||||| | || | ||| || ||||| || |
Sbjct 1681 CCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAA 1740
Query 34939 CGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || ||||| || |||||||| || || |||||||||
Sbjct 1741 GAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCATA 1784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324628848277128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |