Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq839 120 3e-22 seq690 84.2 2e-11 >seq839 Length=49941 Score = 120 bits (132), Expect = 3e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 ||||| || ||||| ||||| || || |||||||| | |||||||||| ||||| || Sbjct 37004 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 37063 Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101 ||||||||||| || | |||||| || ||||||||||| || ||||| || ||||||| Sbjct 37064 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 37123 Query 19102 GCAACTAGTCT 19112 || || ||||| Sbjct 37124 GCCACCAGTCT 37134 >seq690 Length=111065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 ||||| | ||||| ||||||||| | |||| ||||||||||||| |||||| | Sbjct 13481 GTTCGAAGGTAATAGCAACCAGTCTTGAGACCTCGCTTCCATCCATAGAAGTGCATAGAA 13540 Query 47073 GTTAATTTAGAATAACTA-GGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 || | | || ||| | || | || | ||| || ||||| || || ||||||||| Sbjct 13541 GTGAGCTGAG-GGAACGAGGGGTTGGAGAGATGGATGTTAAGGGACTGGGACTGATCAAT 13599 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 || || || | |||||||| | || | | | || | || | |||||||| ||||| Sbjct 13600 GAAAGCTCCACGGTCAGCTGCAAGGTCGATGACAGCCTTCTGCGAGATCTCCCAGACTGT 13659 Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGAGATT 47224 | |||||||| ||| | || || |||| ||| Sbjct 13660 TCGATAAATTTTTTTGAGATCATCGGGGATATT 13692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562100361341640