Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1012 129 5e-25 >seq1012 Length=44893 Score = 129 bits (142), Expect = 5e-25 Identities = 239/346 (69%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30102 || |||||||| || | | ||| || |||||||| ||| |||||| ||||| ||| Sbjct 37088 TTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGGTGTCG 37029 Query 30103 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATG-TCCGTGTA 30161 | | ||||||| || || || || | || ||||| ||| || || ||||| Sbjct 37028 ATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTC-GCCGTCGGCATCAGTGTA 36970 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221 ||| || || ||||| |||||||||||||||||||| |||||||| || || || || Sbjct 36969 CTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAGATCACCTTCCCTTCT 36910 Query 30222 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30281 ||| ||| || ||| |||| || ||| || ||||| | ||||||||| ||| Sbjct 36909 GTGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCATCCCAGATCCCTAC 36850 Query 30282 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30341 |||| |||||| | |||| || || | || |||||||||| ||||| | Sbjct 36849 GCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAAGCTCGGC 36790 Query 30342 CACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 | |||| | | || ||||| | |||||||| ||||| |||| Sbjct 36789 AATGACG--CCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 36746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408611618987573