Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq387 86.0 5e-12 >seq387 Length=80018 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || ||| ||| ||||||||||||||||| || ||| |||| Sbjct 1006 AGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGG 1065 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || ||||| || || ||||| || ||||| | ||| | |||||| Sbjct 1066 CCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCC 1125 Query 48669 TTGTC 48673 ||||| Sbjct 1126 TTGTC 1130 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || ||| ||| ||||| ||||||||||| || ||| |||| Sbjct 1794 AGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGG 1853 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| ||||| || |||| |||||| || || | || | |||||| Sbjct 1854 CCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCC 1913 Query 48669 TTGTC 48673 ||||| Sbjct 1914 TTGTC 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380932024144923