Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq768 125 5e-23
seq387 116 2e-20
seq840 87.8 1e-11
>seq768
Length=10867
Score = 125 bits (138), Expect = 5e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460
||||| || || || ||| |||||||||||||||||||| |||| | ||| ||||||
Sbjct 443 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 384
Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520
||||| || ||||| || || | |||| |||| |||||| || ||| |||| |||
Sbjct 383 CTTATCGGTGATGCCGCGAAGAACCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 324
Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580
||||| | ||||| || ||||| ||| | ||| || || || | || ||| |||
Sbjct 323 GCTAAGCGGTTGATCGGCCGTAAATTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 264
Query 474581 TGGCCTTTTAAGGTGAT 474597
|||||||| ||||| ||
Sbjct 263 TGGCCTTTCAAGGTAAT 247
>seq387
Length=80018
Score = 116 bits (128), Expect = 2e-20
Identities = 132/177 (75%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652
||| ||||| | ||||||| | ||||||||||||||||| || ||||| | || ||
Sbjct 1832 ATTGTAATCGGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTG 1891
Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
|| |||||||| || || ||||||||||| ||||| |||||| || || |||||
Sbjct 1892 CTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC 1951
Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | |||||||||||| ||||| |||||||| || || ||||| |||||
Sbjct 1952 GCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 2008
Score = 114 bits (126), Expect = 8e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656
||||||| | ||||| ||| || ||||||||||| || || || | ||||||||
Sbjct 1608 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 1667
Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716
|||||||| || || |||||||| |||||||| |||||| ||||| || |||| |
Sbjct 1668 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 1727
Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | ||||| || ||||| || ||||| |||||||| |||||||| ||
Sbjct 1728 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 1780
Score = 114 bits (126), Expect = 8e-20
Identities = 126/165 (76%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||| ||| ||||||||| ||||| |||||||| || | ||||| || ||||||||
Sbjct 2124 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 2183
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGT 480724
|| || |||||||| || ||||| |||||| || || || || | | | | |
Sbjct 2184 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 2243
Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| |||| || ||||| ||||||||||||||||| |||||||||||
Sbjct 2244 T-CAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTG 2287
Score = 111 bits (122), Expect = 1e-18
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||| ||||| ||| ||| || | || || || | |||||
Sbjct 1283 ACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGT 1342
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| |||||||| || ||||||||||| | ||||| |||||||||||||| ||
Sbjct 1343 ACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 1402
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||| |||||||| || || || ||||| |||| | | | ||| |
Sbjct 1403 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGA-CTTCGA 1461
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||| || ||||| | |||||| || || || ||
Sbjct 1462 GAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 1501
Score = 93.3 bits (102), Expect = 3e-13
Identities = 106/139 (76%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609
|| ||||| | || ||||| || || ||| |||| ||| ||| ||||| | ||||
Sbjct 1003 CGGAGACGCAAGACGAGATGGAGAGTGGACTC-CTTTTGAAT-ATTGTAATCGGAAAGAG 1060
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
||| | |||||||||||| ||||| || || || || ||||| |||||||| || || |
Sbjct 1061 TTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATAC 1120
Query 480670 CTTCCTTGTCTTGAATCTT 480688
| ||||||||||| |||||
Sbjct 1121 CCTCCTTGTCTTGGATCTT 1139
>seq840
Length=39249
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746
|||||| |||||||||||||| | || || | || || | ||| || ||| ||||
Sbjct 3626 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 3685
Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806
||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || |
Sbjct 3686 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 3745
Query 318807 CATAACTTGGAAAAAGAATTC 318827
|||| | ||||| |||||||
Sbjct 3746 CATAGCGTGGAACCAGAATTC 3766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268127683282748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |