Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq387 100 2e-16
>seq387
Length=80018
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 10/218 (5%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| ||| || || | ||| |||||| || || || || || || || | || | ||
Sbjct 1799 CAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCGTC 1858
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| ||||||||||||||||| |||| ||| |||||||| | || | |||||||||||
Sbjct 1859 TTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 1918
Query 34885 GTTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939
| || || ||||| |||| ||||| | || ||||| |||| |||
Sbjct 1919 TTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGAT-----TCGACTTCAAGGGTA 1973
Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || |||||||| || || ||||| |||||
Sbjct 1974 ATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2011
Score = 95.1 bits (104), Expect = 8e-15
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880
|||| ||||||||||||||||||||||||| |||||| ||||| | || | |||||||
Sbjct 1627 CATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCT 1686
Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940
|||| | || || ||||| | || | ||| || || || |||| || |
Sbjct 1687 TGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGA 1746
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| |||||||| || || ||||| || || ||||||||
Sbjct 1747 TAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1783
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/197 (70%), Gaps = 10/197 (5%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| ||| || || | ||| |||||| ||||| || || || || || | || ||||
Sbjct 1011 CAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATC 1070
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| ||||| |||||||||||||| ||||||||||| || | || | |||||||||||
Sbjct 1071 TTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTC 1130
Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939
| || || |||||| |||| ||||| | || ||||| |||| ||
Sbjct 1131 TTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT-----TCGACTTCAAGAGTG 1185
Query 34940 ATGGTCTTTCCCGTGAG 34956
|| ||||| ||||| ||
Sbjct 1186 ATTGTCTTACCCGTAAG 1202
Score = 89.7 bits (98), Expect = 3e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| ||| ||||| || ||||| ||||| || || | || ||||
Sbjct 1293 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 1352
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| || || || || |||| ||||||||| || | || | || ||||||||
Sbjct 1353 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 1412
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| | |||||| || | || || |||
Sbjct 1413 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTC 1472
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | ||||| ||||||||||||||
Sbjct 1473 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 1504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325688032773419
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |