Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq387 129 4e-25
>seq387
Length=80018
Score = 129 bits (142), Expect = 4e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | ||| || || | ||| |||||| ||| ||||| || |||||||||||
Sbjct 1784 ACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGA 1843
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || |||| || | ||| |||||||| |||||||| |||||||| || | ||
Sbjct 1844 AAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 1903
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| || || | | |||| ||| | ||| ||||| ||||| |
Sbjct 1904 GATACCCTCCTTGTCTTGGATCTT-GGCCTTGACATTGTCGATGGTATCGCTCGATTCGA 1962
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| || || ||||| || || | ||||| || ||||| ||||||
Sbjct 1963 CTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 2012
Score = 102 bits (112), Expect = 5e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| ||||| |||||||| ||||| || || || | || || | |||||| || ||||||
Sbjct 1314 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAA 1373
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
||||| || |||||||| | || | |||||| ||||| ||| ||| | | ||| |
Sbjct 1374 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTC-GCCTTAACGTT 1432
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| | ||||| || || || || | ||||| || || || || || || || ||
Sbjct 1433 GTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGAC 1492
Query 33738 AAAGATCTGCATA 33750
|||||||||||||
Sbjct 1493 AAAGATCTGCATA 1505
Score = 96.9 bits (106), Expect = 2e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | ||| || || | ||| |||||| ||| ||||| || |||||||||||
Sbjct 996 ACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGA 1055
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | |||||||||||| || || | || |||||||| | ||
Sbjct 1056 AAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGG 1115
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| || || | | || | ||| | ||| ||||| ||||| |
Sbjct 1116 GATACCCTCCTTGTCTTGGATCTT-GGCCTTGACGTTGTCGATGGTATCGCTCGATTCGA 1174
Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725
| |||| ||||| || ||||| ||
Sbjct 1175 CTTCAAGAGTGATTGTCTTACCCGT 1199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328699188697920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |